| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,301,050 | IS1 (+) +9 bp | intergenic (+503/‑124) | insH21 → / → oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 20 (0.780) | 20/486 | 0.3 | 90.6% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1301058 | 2 (0.080) | intergenic (+511/‑124) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1301050 = | 2 (0.080) | 16 (0.630) | 16/486 | 0.5 | 88.5% | intergenic (+503/‑132) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1978503 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
GCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGG > NC_000913/1300821‑1301305 | gCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGATAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACAAGAATAAATAAAGTCGGTGATAGTAATACGt > 2:81204/1‑250 (MQ=255)atggatgagggatggatggctgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaagtgagcggcataacctgaatctgaggcagcacctggcaaggctgggacggaagtagctgtcgttctcaaaatcggtggagatgcatgacaaaggcatcgggcattatctgaacataaaacactatcaataaggtggagtcatgaccAAGTCGGTGATAGTAATACGTa > 1:78525‑M1/230‑251 (MQ=255) gatgacggatggctggccgttgaattaatcccgccggaagggaaagcgtcacgtaatcagcaagcgagatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataaggtggggtcattaccAAGTCGGTGATAGTAATACGTAACg > 2:69558‑M1/227‑251 (MQ=255) ggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagtgggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTaa > 1:83749‑M1/217‑250 (MQ=255) ggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgagtcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCt > 1:282700‑M1/213‑249 (MQ=255) ggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGa > 1:20114‑M1/213‑251 (MQ=255) aatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaaccctaccaataagttggagtcattaccAAGTCGGTGTAAGTAATACGTAACGATAAAGTAACCTTACCGCAGCAAGtc < 2:90749‑M1/51‑1 (MQ=255) ttGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACCGTACGAATAGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttg < 1:190582‑M2/250‑46 (MQ=255) tGCTTAAAAATTTTGCAAAATGTATTGGGGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga > 2:166797‑M2/1‑204 (MQ=255) cTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggg < 1:143840‑M2/251‑50 (MQ=255) gTATTGGCGATAAAGAACCGCATTTGGTACTTCCCGGGCAACCGACAGACTATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTTGCGAAAGAATAATATGTCTCGACAGGGTAGAAACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtggttttgaggtgctccagtggcttctgttt > 2:18153‑M2/1‑183 (MQ=255) aTTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct > 1:102151‑M2/1‑181 (MQ=255) gAGTAAGAACCGCATTTGGTCCTTTCCGGGCAACCGCAAGACGATTCTTTATTGGTACTGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGTGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGACTAAATAAAGTCGGTGggtgctgctgccaacttcctgcttttgagaatgatggtgtttttgaggtgattaagtggcttctgtttcactaagg < 2:234219‑M2/251‑77 (MQ=255) aaGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGATAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACAAGAATAAATAAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACAt < 1:81204/251‑1 (MQ=255) gatatacgcagcaaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATg > 1:207220‑M1/162‑251 (MQ=255) aGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc < 1:259764‑M2/251‑82 (MQ=255) atacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTg > 1:159293‑M1/159‑251 (MQ=255) gaattgagcggcataacctgaatctgaggcagcacctggcccggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATAcc > 1:75996‑M1/150‑251 (MQ=255) cacccgccAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtg > 2:85868‑M2/4‑145 (MQ=255) gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATGCCAGTAATTATAATGAGGGAGTCCa > 1:84064‑M1/125‑249 (MQ=255) aTTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggggggggcgtaacggc < 2:254879‑M2/250‑119 (MQ=255) cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgccaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAAtgc < 1:178411‑M1/136‑2 (MQ=255) taatTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc < 1:5287‑M2/251‑141 (MQ=255) agagCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctct > 1:254879‑M2/1‑97 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcacttagttggagtaattacaAAGTCGGTGATAGTAATAAGCAACGAGAAAGTAAACTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCAGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCACAAAACAATGACCAACATAACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGatgcgat < 1:270944‑M1/185‑3 (MQ=255) gACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagt < 1:72681‑M2/251‑183 (MQ=255) gggAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagagtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcact < 1:247419‑M2/251‑188 (MQ=255) acaGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccg > 1:158540‑M2/1‑57 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACAAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTTCGCTAATGGCAGGGAATgtcgccc < 2:71159‑M1/205‑3 (MQ=255) aCGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttc > 1:163516‑M2/1‑52 (MQ=255) aaGGTGATCGTCTGGATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatccctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacg > 1:33747‑M2/1‑40 (MQ=255) aGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggagatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagatgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggccatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtaagc < 2:125749‑M2/251‑213 (MQ=255) tCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcacc < 1:203633‑M2/248‑216 (MQ=255) aagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTAGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCTCGCTGGCAGCTAGTGTACCCGCaggcggcac < 1:271404‑M1/233‑5 (MQ=255) aCCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgat < 1:4259‑M2/251‑230 (MQ=255) attaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGTCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTAACCGCAGGCGTCACACTGGCGGaaa < 1:37330‑M1/244‑1 (MQ=255) ggtgggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatggcgtt > 2:72681‑M2/1‑4 (MQ=255) | GCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGG > NC_000913/1300821‑1301305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |