New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	3 (0.120)	3/486	2.8	8.6%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1302240	32 (1.250)					coding (1059/1632 nt)	oppA	oligopeptide ABC transporter periplasmic binding protein
Rejected: Frequency below/above cutoff threshold.

GAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTG‑TGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACTGGTTAACCAGGAGTGGAAAACGTTCCTCGACACCCGTCACCAGGGTACTTT  >  NC_000913/1302010‑1302485                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                       gAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTG‑TGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGCATGGTTTgg                                                                                                                                                                                                                                    >  2:72019/1‑251 (MQ=255) gAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTG‑TGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTgg                                                                                                                                                                                                                                    >  1:7511/1‑251 (MQ=255)               gctaaaaaaaGAGATCCGGGACGAATTTCCCGTTAACCCAT‑CCTGGTGCACTTACTATTACAAAATAAACACCAAAAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGaaa                                                                                                                                                                                                                      <  1:72019/247‑1 (MQ=255)                                cGGACGAAGTTCACGTTGATCCATCCCTG‑GGCCCTTACTATTACAAAATTAACAACCAAAAACCGCCATTCAACGATGTGCGTGTGCGTCCCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                                                                                                                                     >  1:83676‑M2/1‑200 (MQ=255)                                     gAAGTTCACGTTGATCCATACCTG‑TGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAGAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGaaaa                                                                                                                                                                                                 >  2:12336/1‑250 (MQ=255)                                                         ccTG‑TGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGtt                                                                                                                                                                            >  1:275464/1‑251 (MQ=255)                                                                    tACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGAATGGACCGCGATATCATTGGTAATAAAGTGAAAGAGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAACATTGACTCAGACAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACAAAGAAGCGAAAAAACTGCTGGCTGAAGAGGGTTATActgc                                                                                                                                                                     >  1:33305/1‑245 (MQ=255)                                                                     aCTATTACAAAATAAACACCAAGAAACCGCCATTCAACGAGGTGCGTGTGCGTACCGCATTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGAc                                                                                                                                                                 <  1:220553/251‑1 (MQ=255)                                                                      atATTACAAAATAAAAACCCAAAAACCGCCATTCAACGATGTGCGTGTGCGGACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACa                                                                                                                                                                <  1:60181/250‑1 (MQ=255)                                                                              aaaTTAACACCCAAAACCCGCCAGTCAACGATGTGCTTGTGCGTACCGCACTGAAACTAGGTAGGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                                                                                                                        >  1:146169‑M2/1‑155 (MQ=255)                                                                                           gAAACCGCCATTCAACGAGGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGCCCATCAACCtgt                                                                                                                                           >  2:111519/1‑251 (MQ=255)                                                                                                cGCCATGCATCGATGTGCGTGGGCGTACCGCACTGAAACTAGTTTGGGACCGCGATATTATTTTTAAAAAAGTGAAAGCGCAGGGCACCAGGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGtat                                                                                                                                      <  2:194235/251‑1 (MQ=255)                                                                                                                 cgtgtgcgtACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGc                                                                                                                      >  1:249396/1‑250 (MQ=255)                                                                                                                  gtgtgcgtACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATc                                                                                                                                                  <  1:193790/221‑1 (MQ=255)                                                                                                                  gtgtgcgtACCGCACTGAAAATAGGAATGCACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCATATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCCGAATGGTTTGGCTGGAGCCAGGAAAAAAGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACAGCAGACAAACCGTTGACCATc                                                                                                                                                  >  2:193790/1‑221 (MQ=255)                                                                                                                    atcggaaccccacgaaaacgaggattGGACCGCAATATCATTGTTAATAAAGGGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATaa                                                                                                                  <  2:111147/226‑1 (MQ=255)                                                                                                                        taaccactcTGAAACTAGGTAGGGCCTGGGAAATCATTGTTAAAAAAGGAAAAGCCCAGGGCAACTTGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATaaaaa                                                                                                               <  2:206289/242‑1 (MQ=255)                                                                                                                        gtACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATaa                                                                                                                  >  1:111147/1‑247 (MQ=255)                                                                                                                         tACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAACGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactgccgtcccagccgtaccaggtgctgcctcagattcaggttatgc                                                                                                             <  2:113143‑M2/251‑140 (MQ=255)                                                                                                                            ccacatacagttagttATGGACAGCGATATAATTGTTAATAAAGTGAAAGCGCGGGGAAACTAGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACGGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCAGCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTgg                                                                                                          <  2:145869/236‑1 (MQ=255)                                                                                                                                  gAAACTAGGTTTGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGAtt                                                                                                     <  1:232604/250‑1 (MQ=255)                                                                                                                                        aGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCct                                                                                              >  1:106382/1‑251 (MQ=255)                                                                                                                                                 ccGCGATAACATTGTTAAAAAAGTAAAAGCGCAGGGCAACAGGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATtgt                                                                                     <  2:7511/251‑1 (MQ=255)                                                                                                                                                   gcgATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGACGCGAAAACACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTgg                                                                                   >  2:294298/1‑251 (MQ=255)                                                                                                                                                     aatatatgtGTTAACAAAGTGAAAGCGAAGGGCAAAATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGACAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGgaa                                                                                 <  2:106108/243‑1 (MQ=255)                                                                                                                                                      atatCATTGTTAATAAAGCGAAAGCGCAGAGCAACATGCCCGCCTATGGTTAAACTCCACCGTATACTGATGGCGACAAATTGACTCAGCCTGTATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAATAAGCGAAAAAACTGCTGGCTGAAGCGAGTTATACTGCAGCCAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATATGCATAACAAGCTGTCGTTTGCCGACTCTTCATTGTggt                                                                                  >  2:32028/1‑248 (MQ=255)                                                                                                                                                      aaataatcttcaataaAGTGAAAGCCAAGGGAACCAGTCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATTGTTTGGCGGGAGCCAGGAAAAACTTAACGAAGAAGCGAAAAACCTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCGGGCGATTGCTGCCTCTTCATTGTGgaag                                                                                <  2:44707/240‑1 (MQ=255)                                                                                                                                                               taacaaatgTGAAAGCGCTGGGCATCCAGCCCGCCTATGGTTACACTCCACCGGATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACTTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGTTTATACCGCAGACAAACCGTTGACCAGCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACAt                                                                        <  2:206975/242‑1 (MQ=255)                                                                                                                                                                                cAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTCGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAATGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAAACTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACt                                                     >  1:284009/1‑251 (MQ=255)                                                                                                                                                                                 aGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACTg                                                    >  1:191295/1‑251 (MQ=255)                                                                                                                                                                                            cccGTCTATGGTTACACTCCTCCGTATCATGATTGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCAGCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACTGGTTAACCAGGa                                         <  1:286375/251‑1 (MQ=255)                                                                                                                                                                                                ccTATGGTTACACGCCACCGTATACTGATGGCGAAAAATTGACCCAGCCAGAATGGGTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACTGGTTAACCAGGAGTgg                                     <  2:64616/251‑1 (MQ=255)                                                                                                                                                                                                                 ccGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACTGGTTAACCAGGAGTGGAAAACGTTCCTCGacac                    <  1:12336/251‑1 (MQ=255)                                                                                                                                                                                                                   gTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGAACATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGCTTGCTGCCTCTTCATTGTGGAAGAAAAACATTGAT‑TACAACGTCCAACTGGTTAACCAGGGGTGGAAAACGTTCCTctaccccc                  >  2:266182/1‑244 (MQ=255)                                                                                                                                                                                                                                   aaaTTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTTGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑TACGTCAAACTGGTTAACCAGGAGTGGAAAACGTTCCTCGACACCCGTCACCAGGGTACttt  <  1:49833/251‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                       GAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTG‑TGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTGGCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTA‑AACGTCAAACTGGTTAACCAGGAGTGGAAAACGTTCCTCGACACCCGTCACCAGGGTACTTT  >  NC_000913/1302010‑1302485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.