mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 898,192 | 0 | C | T | 30.0% | 42.4 / 10.1 | 31 | V68V (GTC→GTT) | ybjO | putative inner membrane protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3187426 | NA (NA) | 3 (0.100) | 3/480 | 3.4 | 7.0% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 4124494 = | 40 (1.270) | intergenic (‑38/+118) | cytR/priA | DNA‑binding transcriptional repressor CytR/primosomal protein N' | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 3 (0.100) | 3/480 | 3.4 | 10.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1085990 | 26 (0.830) | coding (999/1065 nt) | phoH | ATP‑binding protein PhoH | |||||
| * | ? | NC_000913 | = 168811 | 26 (0.830) | 3 (0.100) | 3/480 | 3.4 | 10.3% | coding (1328/2244 nt) | fhuA | ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | = 258675 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||