| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,400,254 | C→T | intergenic (+52/‑34) | miaA → / → hfq | tRNA dimethylallyltransferase/RNA‑binding protein Hfq |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,400,254 | 0 | C | T | 90.9% | 58.7 / ‑1.7 | 22 | intergenic (+52/‑34) | miaA/hfq | tRNA dimethylallyltransferase/RNA‑binding protein Hfq |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (11/9); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
ATACGATGAAATGGTTTATCGAGGTGTTTGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGG > NC_000913/4400040‑4400489 | aTACGATGAAATGGTTTATCGAGGTGTTTGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGGTGTTGGTGCTATCGCAGGCTGCATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGACCCAATAAGCATATAAGAAAAAGAGAGAATg > 1:329118/1‑251 (MQ=255) tACGATGAAATGGTTTATCGAGGTGTTTGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATgg > 1:83046/1‑251 (MQ=255) aTCGAGGTGTTTGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCttt > 1:111806/1‑251 (MQ=255) tGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAAGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg < 1:112547/250‑1 (MQ=255) agaCAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 1:50714/251‑1 (MQ=255) tGGCTAAGCGGCAGATAACCTGGCTGCGTGGTTGGTAATGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAAATGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAATTACAAATAAGCATATAAGGAACAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAcggc < 2:215568/250‑4 (MQ=255) aaGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCggg < 2:325577/251‑1 (MQ=255) aaaaCCTGGCTGAGTGGTTCGGGAGGGGTTCACTCGCTTGACAGTAAAAAACCAGAACAGGCGCGGGACGAAGGATAAACGGTTGTTTGTGCTAGCGCCGGCTGAATGTGAACAATTGAGACGTGTAGTGAGCAATTTTTTCAGAATCGAAGGGTTTAAAGTAACAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGAAATGCGACGGG‑GACGTTTTc > 2:28013/3‑251 (MQ=255) tGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGCCGAAGTATTACAGGTTGCTGGTGCTATCGCAGGCAGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGttt > 1:17934/1‑251 (MQ=255) gggAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTgg < 1:79402/250‑1 (MQ=255) gAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGa < 1:142111/251‑1 (MQ=255) ggCTTGACAGTGAAAAACCAGAACAGGCGCGTGACTAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAAGTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGTGGCAATCTTTACAAGATCCGTTCCTGGACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAg < 1:50967/249‑1 (MQ=255) tcTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGATATTAAGCTg > 2:149260/2‑251 (MQ=255) aaCCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGa < 2:32117/251‑1 (MQ=255) ttgttgGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGaaaa > 1:79328/1‑250 (MQ=255) tATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGCATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTTTTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCTTGTTGAACAACACGGTcggc > 2:8877/1‑248 (MQ=255) gtACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCa < 1:263079/251‑1 (MQ=255) aCAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCAc < 2:146068/250‑1 (MQ=255) tATCGAGCGCAATTTATTCAGAATCGACAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGCATGGCTTAGGGGCCATCTATACAAGATCCGTTCCTGAAAGAACTGCGTCGGG‑CACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATATGTTCGTGATCACGTTAAAAAACAAGGTCAGCCAGATGGTTTAAAAGCACGCGCTTCCTAc > 2:3002/1‑249 (MQ=255) cGTGCGCAATTTTTTCAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGACTGGCTAAGGGGCAATCTTTACAAGCTCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAACAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACtgttg > 1:155397/1‑251 (MQ=255) ttCAGAATCGAAAGGTTTAAAGTACAAATAAGCATA‑AAGGGAAAGAGAGAATGGCTAAGGGGCAATCTTTAAAAGATCCGTTCCTGAACGCACTGCGTCGGGGAAGGT‑TTCCAGTTTTTATTTTTTTGGTGGATGGGATTAAACTGCAAGGGGAAATCGAGTCTTTTGATCCGTTCGTGATCCTGTTGAAAAACCCGGTCAGCCAGATGGTTTACAAGCACGCGGTTTTTACTGTTTTCCCGTCTCGCCCg > 1:186335/1‑251 (MQ=255) cAGAATCGAAAGGTTTAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGCTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCgg < 2:111806/251‑1 (MQ=255) | ATACGATGAAATGGTTTATCGAGGTGTTTGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG‑AACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGG > NC_000913/4400040‑4400489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |