| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,652,331 | 0 | T | C | 96.5% | 96.7 / NA | 29 | intergenic (+2346/+397) | ydfD/ynfP | lysis protein/protein YnfP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (14/14); minor base A (1/0); total (15/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
ATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCCATG > NC_000913/1652087‑1652574 | aTGGTGGGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagag < 2:56871/251‑1 (MQ=255) gTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcagaa < 1:191268/250‑1 (MQ=255) gTTTATACTGGAGTTCGCACTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcaga < 1:52695/249‑1 (MQ=255) tataCTGTAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGCTCTGAAAAATGGAACAATGCTGATCAGGAGAAATTTAGCAAAAGACCGTTTCATGGTACCAAAAACACAGGCGGGAACACAA‑CGGGGTATTAATATTATT‑TAGCCC‑GCAATCAACGCACTCCTGAATACAAAT‑ACATATAAGGA‑AATGAGCAAAAAACATATCAATTATTTTCACCTCAGATAGTATAGcagaacaa > 2:245887/1‑249 (MQ=255) gAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGATGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACaa < 1:293783/251‑1 (MQ=255) aGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGtt > 1:286137/1‑251 (MQ=255) tgatgaTCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCAc < 2:199378/196‑1 (MQ=255) tgatgaTCAGGAGAAATTTAGCAAAAGACCGTTTCACGGCACCAAAAACACAGGCGGGAAC‑CAATCGGGTCTTTCATCTTTTT‑TAGCAA‑GCAATCGACCCTCTCCGGGGT‑CAGCTGACAT‑TAACGAGACTGTGCAAAGACCACATTATTGATGTTCACCTCAGAGGGTATGGCAGAACAGAAAAACAAAAATGCAc > 1:199378/1‑196 (MQ=255) cAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTg < 2:36828/251‑1 (MQ=255) aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGAAAA‑CAAACGAGTCATTCAAATTATT‑AAACCAACCAAAGGA‑GCTCTCCGAGGT‑CAGATGACAT‑TTACTCAACTGTGACCAGAGCATATCATTGAGGTGCAACTCAGAGCGTATGGCAGAACAGAAAAACAAAAATGAAACTTTTTTTTTCAAACTGAAGTGACAGCGAGAGTAAAAAATTAGGGGGACCATTTTAcccttt > 2:344817/1‑246 (MQ=255) agaAATTTAGCAAAAGACCGTTTCAAGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTc < 1:109797/251‑1 (MQ=255) aaaTTTAGCAAAAGACCGTTTCACGGGACCAAACAGACAGGCGGGAAT‑CAAACCGGGCATTCGCATTGTTGAGGCCA‑‑CTATTGAGGGTGTCCGGAGT‑CAGATGACAG‑AAACTAGAATGAGGAAAAAGCATATTATTGATGTTCAACCCAGAGAGTATGCCAGTACACAAAAAAAAAAATACACCTTTGGTTTTAAACCCGAAATGTCAGCGGGAGTAAAAAATTATGGTGACCATTTTACCGTTGAATCa > 1:96226/1‑250 (MQ=255) aggccGTTTCACGGTACCAAAAACCCAGGCGGGAAC‑CCATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CATATGACAT‑GAACGAGACTGAGCAAAGAGCATATCATTGATTTTCACCTCAGAGAGTATGGCAGAGCAGAAAAACAAAAATGCACCTTGGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGAtgt < 2:137025/248‑1 (MQ=255) tCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGGCCTTTATCTTATT‑AAAACA‑ACAAACGACGCTCTCCCGAGT‑CAGATGACAT‑TAACGAGACTGAGCCAAAAGCATATCATTGCTGTTCACCCCAGAGAGTATGGCAGAACAAAAAAACAAAAATGCCCCTTTGTTTTTCAAACTGAAGGGTCAACGAGAGTAAAAAATTATGGTGACCATTTTACCTTTGACCCAATAAGGCAAATGTGGGACGc > 2:71075/1‑250 (MQ=255) cGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCAACTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTc > 2:158852/1‑251 (MQ=255) cAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATc < 2:286137/251‑1 (MQ=255) gggTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGaaa > 1:192172/1‑250 (MQ=255) ggTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAAt > 1:142384/1‑251 (MQ=255) attcatCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACaaaaa < 2:197173/120‑1 (MQ=255) attcatCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACaaaaa > 1:197173/1‑120 (MQ=255) cGACGCTCTCCGGAGG‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATAACATTGATTGTCACCTCAGAGAGTATGGCAAAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCATCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGCACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGGCGAGACATACTTATGCct < 2:207047/251‑1 (MQ=255) gatctcCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGAATATCATTGATGATCACATCAGAGAGTAGGTCAGAACAGAAAAACAAAAATGCAACTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACAATTTTACCGTTGACTAAATAAGGCAGATGTAGTACGCAGCGATAAAACGTGCCGGACTTCGCAATCGAAAATCATATCAATTGTGACAAACTAATGCctgttg > 2:191576/3‑248 (MQ=255) cAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGc < 2:173157/251‑1 (MQ=255) aGATGACAT‑TAACGAGACTGAGCAAAGAGCAGATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAACATTTTACCGTAGACTCAAGCAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTCATGCCTGCTGGGCGCTGACAGcg < 2:229787/251‑2 (MQ=255) aT‑TAAAGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCt > 2:334757/1‑250 (MQ=255) aaaGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGATAGCTGGTGCTAACCCGGCATTTATAGc > 2:238825/1‑251 (MQ=255) tGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCCATg > 1:71685/1‑251 (MQ=255) ttCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATa > 2:117548/1‑113 (MQ=255) ttCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATa < 1:117548/113‑1 (MQ=255) | ATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAAC‑CAATCGGGTCATTCATCTTATT‑AAGCCA‑GCAATCGACGCTCTCCGGAGT‑CAGATGACAT‑TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCCATG > NC_000913/1652087‑1652574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |