| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 9 (0.290) | 13 (0.440) | 11/448 | 1.3 | 58.6% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 10 (0.340) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
TCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGA > NC_000913/1209372‑1209835 | acttcatcaatagggcgactgacattgtcataatttgcaataacggcaaaagaggcagtattaaacgcaaccgggaatacatctgtagttccatccccctcagaggcagatgcttttgcggcacgccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaacctgtgcgtcctaatgtagccgttgcagcattgagttttgctccttcgcccaaaccaaCGtt < 2:177583‑M2/4‑1 (MQ=255) gcattgataggtgcgctgacattgtcataatttgcaacaacggcaacacaggcattattaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:197498‑M2/7‑1 (MQ=255) tagtaggtgcgctgacatagtcataatttgcaacaacggccacacaggcattattaaacgcaaccggaaatacaactgtatttccatcccccccagaggcagatgcttttgcgtcattcaacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagcctgtgctgcatttagttttgctccttatccaaacccaaCGTTTATGaa > 2:180199‑M2/241‑250 (MQ=255) gcaaaaacggcaacacaggcattattaaacgcaaccgggaatacaacagtatccccatcccccccagaggcagatgctgttgcggcattccacccccactgaatgattactgattgcgcaataccaccaatcatatccggtatagctatgaaaccggtgcgtcctaatgtagccggtgctgcattgaggtttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 2:49541‑M2/40‑1 (MQ=255) ctgaaTCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTACATCAGGCAATTTATTTGTCGGATAAGCCTATGACAGTTCCGGGTCTTCTTCAGCAGAAAAAGCAGCACCATTGCATTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACAACACCAGGAAATGCAGAGCCTTCTCCCAACCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:126065/5‑251 (MQ=255) aacggcaacacaggcattattaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg > 1:282402‑M2/207‑251 (MQ=255) aTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:107069/1‑251 (MQ=255) acaggcattattaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTAcc > 2:342154‑M2/198‑250 (MQ=255) ggcattattaaacgcaaccggtaatacaactgtatttccatcccccccagaggcagatgctgttgcggcaatccacccccactgaatgattactgattgatcaataccaccaatcataaccggtatagctctgaaaccggtgcgtcctaatttagccgtttctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:142084‑M2/57‑1 (MQ=255) ttaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccccaatgaatgattaatgattgctcaataccaccaataatacccggaatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctcattctcccaaaccaaCGTTTATGAAACTGACGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:316957‑M2/188‑250 (MQ=255) ccAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc > 2:13966/1‑251 (MQ=255) ccAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc < 2:50279/251‑1 (MQ=255) gTAAATCAGGCAATTTATTTGTCGGATACGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAACAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGACGAAATACCAAACAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt > 2:176214/1‑251 (MQ=255) atttccatcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt > 1:339487‑M2/162‑250 (MQ=255) tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCTGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAAAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACTTGCTTATTGGCTCTGTACGCGTAtaa > 2:241403/1‑248 (MQ=255) catcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 1:242304‑M2/95‑1 (MQ=255) aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGAGGCCCCATTGCATTTCAGCCAGCCTGTTGGAGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGTGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt < 2:308493/251‑1 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg < 1:69625/250‑1 (MQ=255) gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGAt > 1:266046‑M2/97‑251 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtgttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAATATAAGCGgcact < 2:16108‑M2/180‑2 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTACTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGTGATTTAACATGCTTATTGTCGATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGGGCAGGATGCGAGCGGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGa < 1:244200/251‑1 (MQ=255) gttgctgttgcggcagtgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAATTGACCAGGACACAGATCTACAACTTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATTATCGGCACAAAGTCCGAAAGGCCGGGACTGaaaaaa < 1:238598‑M2/207‑1 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGa < 1:176214/251‑1 (MQ=255) | TCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGA > NC_000913/1209372‑1209835 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |