| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,293,781 | 0 | G | A | 94.3% | 89.8 / ‑2.6 | 35 | G80D (GGC→GAT) | nrfG | putative formate‑dependent nitrite reductase complex subunit NrfG |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (18/15); total (19/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 | |||||||||||
| * | NC_000913 | 4,293,782 | 0 | C | T | 94.3% | 95.8 / ‑1.2 | 35 | G80D (GGC→GAT) | nrfG | putative formate‑dependent nitrite reductase complex subunit NrfG |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (18/15); total (19/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.07e-01 | |||||||||||
AGCGATGAAACAGCCCAAAATACCGGTGAAAATGCTGACAACACTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGGCGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGTAATGAAATCACCGCCCTGATGCTGCTGGCTTCCGATGCGTTTATGCAGGCGAACTACG > NC_000913/4293539‑4294023 || aGCGATGAAACAGCCCAAAATACCGGTGAAAATGCTGACAACCCGCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACt < 2:95505/251‑1 (MQ=255) gAAACAGCCCAAAATACCGGTGAAAATGCTGACAACACTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCtgt > 1:19634/1‑251 (MQ=255) aaaCAGCCCAAAATACCGGTGAAAATGCTGACAACACTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCtgtg < 1:232295/251‑1 (MQ=255) gCCCAAAATACCGGTGAAAATGCTGACAACACTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGGCGAGTACTATCTGTGGCaa > 1:229311/1‑250 (MQ=255) ccGGTGAAAATGCTGACAACACTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCGGTGGCAAAACGATTACAg < 1:231007/251‑1 (MQ=255) cacTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGAAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTAc > 1:263137/1‑251 (MQ=255) cACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTc < 1:165167/251‑1 (MQ=255) cGATATTGATGGGATTTCTCTGGGTCGACAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTAGCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAAGCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAg < 2:233791/251‑1 (MQ=255) attgggggTATTTCCCTGTGTCGGCAGTTATCTGTTCAGGCCAAA‑TGTGCATGCGGTACGTGCGGAGTATAACCGTCAGCGCGATCCGCTACATCAGTTTGACAGCCAGCAAACCCCGGAAGCGGAGCTTCATGCAGTGGAGGATAAAATCCGCACTAATCCACAAAACAGCGAACAGTGGGCGTTTCTGGATGAGTACTAGCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAggtg < 2:159907/244‑3 (MQ=255) gATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGc > 1:121835/1‑251 (MQ=255) gTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGGACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTCCTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCCGGCGTTGCAACt > 1:307970/1‑251 (MQ=255) tctGTGTCGGCAGTTATCTGGTAAGCCCAAAATG‑GCAGGCGGTACGGGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACACAACAGCGAACAGAGGGCGTTACTGGATGAGTACTATCTTTGGCAAAACGATTAAAGAATTTCATTGCTGGCGTACCTTCAGGCGTTGCGACTACgaggg > 2:135631/1‑247 (MQ=255) gtgtCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGGACGTGCGGAGTATCAGCGTCAGCGCGATCAGCTAAATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTAATGGATGAGTACTACCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGAAACTCCgtggaga > 2:243836/1‑247 (MQ=255) tGTTAAGCCCAAAATG‑GCAGGCGGTACGAGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCCGCCAGCAAACCCCGGATGCGCAGCTTCAGGCATTGCAGGATAAACTCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAAAGATTACAGCCATTCGTTGCTGGCGTCACGTCAGGCGTTGCAACTACTGGGTGAGAACgatagactgaat > 2:37745/1‑240 (MQ=255) aaGCCCAAAATG‑GCAGACGGTACGTGCGGAGTATCCGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAACCGATTACAGCAATTCGATGCTGGCGTACCGTCAGGCGTTGCAACTACGGGGTGAGAACGCttgaatgtatgggg > 2:199184/1‑238 (MQ=255) aGCCCACAATG‑GCAGGCGGTACGTGCGTAGTATCAGCGTCAGCGCGATCCGCTACATCAGGTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTTCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATgcggc < 1:27615/251‑1 (MQ=255) gctgAGTATCAGCGTCAGCACGATCCGCTACAACAGTTTGCCAGCCAGCAAACCCCGGAAGCGCATCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGTGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTAGTACCa < 2:19634/248‑1 (MQ=255) gCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGCACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCa < 1:188647/251‑1 (MQ=255) cggctgatcagctcccacgcgCTCCGCGACATCAGTGTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAAGCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGGCGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGGTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGTTGCTTTAATACCat < 2:229311/234‑2 (MQ=255) gTATCCGCGTAAGCGAGATCCGCCACATCAGTTTGCAAGCCAGCAACCCCCGGCAGCGCAGCTTCAGGCAATGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGCACAGTGGGCGGTACTGGATGAATACTATCTGTAGCAAAACGATTACAGCAATTCGTTGGTGGAGTACCGTCAGGCGTTGCAATTCCGAGGGGCGAACGCTGAACTGTATCTGGCGTTGGCGACGGTGCTTTTTTAACAgagc > 2:313549/1‑247 (MQ=255) tcagcgCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGCTTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGGGCTTTATTACCAGGCCAGCCAGCat > 2:340006/1‑250 (MQ=255) gtggacccgctgaaTCAGGTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGAAGGATAAAAGCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTATTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGAc < 2:70218/238‑1 (MQ=255) gATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCGGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGGCGGTGCTTTATTACCAGGGCCGCCAGCatattgccgc > 2:49938/1‑245 (MQ=255) aGTTTGCCAGCCAGCACACCACGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGAGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTCCAGCAATTCGTTCCTGGCGTACCGTCAGGCGTTGCAACTACGTGGCGTGGACGCTGAAATGCATGAGGCGCTGGCGCCGTTGCTTTATTAACAGGCCAACCACCACAT‑ACCAGCCCATACTCgcgc > 2:279751/1‑250 (MQ=255) tGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATg < 1:37745/250‑1 (MQ=255) cAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGCACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGAATATGACC‑GCCCAGACTCGCGCAATGAACGACAAAGc > 2:99135/1‑251 (MQ=255) aaaCCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGcc > 1:241750/1‑251 (MQ=255) ggAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAACCGATTACAGCACTTCGTTGCTGGAGTACCGTAAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTTCTTTATTACCAGGCCCGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACACAGCCCTCgcgc > 1:147783/1‑251 (MQ=255) aaGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCccgccg > 2:200213/1‑249 (MQ=255) aGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGt > 1:314616/1‑251 (MQ=255) aTCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGTAATGAAATCACCGCCCTGAtgct > 1:278235/1‑251 (MQ=255) gcgcTAATCCCCAAAACAGCGAAAAGTGGGCTTTACTGGATGAGTTCTACCTGTGGCAAAACGTTGTCAGCAAGTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAGCGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCTAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGTAATGAACTCACCGCCCTTATGcttctg < 2:87688/251‑1 (MQ=255) caAAACAGCGAACAGTGGGCGTTACTGGATGAGTACTATCGGTGGCAAAACGATTACAGCTATTCGTTGCGGGCGTACCTTCAGGCGTTGCAACTACGTGGTGTGAACGCTGATCTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAAGGATCGACAAAGCCCTCGCGCTGGGCAGTAATGAAATCACCGCCCTGATGCTGCTGGCTTCCGATGc < 2:272664/251‑1 (MQ=255) cAGTGGGCGTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGTAATGAAATCACCGCCCTGATGCTGCTGGCTTCCGATGCGTTTATGCAGGc < 1:46152/251‑1 (MQ=255) gTTACTGGATGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTCCCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGTAATGAAATCACCGCCCTGATGCTGCTGGCTTCCGATGCGTTTATGCAGGCGAACTAcg < 2:121835/251‑1 (MQ=255) || AGCGATGAAACAGCCCAAAATACCGGTGAAAATGCTGACAACACTCACGATATTGATGGTATTTCTCTGTGTCGGCAGTTATCTGTTAAGCCCAAAATG‑GCAGGCGGTACGTGCGGAGTATCAGCGTCAGCGCGATCCGCTACATCAGTTTGCCAGCCAGCAAACCCCGGAAGCGCAGCTTCAGGCATTGCAGGATAAAATCCGCGCTAATCCACAAAACAGCGAACAGTGGGCGTTACTGGGCGAGTACTATCTGTGGCAAAACGATTACAGCAATTCGTTGCTGGCGTACCGTCAGGCGTTGCAACTACGTGGTGAGAACGCTGAACTGTATGCGGCGCTGGCGACGGTGCTTTATTACCAGGCCAGCCAGCATATGACC‑GCCCAGACTCGCGCAATGATCGACAAAGCCCTCGCGCTGGACAGTAATGAAATCACCGCCCTGATGCTGCTGGCTTCCGATGCGTTTATGCAGGCGAACTACG > NC_000913/4293539‑4294023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |