| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 543,263 | 2 bp→GT | coding (783‑784/786 nt) | allE ← | (S)‑ureidoglycine aminohydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 543,263 | 0 | A | G | 100.0% | 88.0 / NA | 29 | *262Q (TAA→CAA) | allE | (S)‑ureidoglycine aminohydrolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (16/13); total (16/13) | |||||||||||
| * | NC_000913 | 543,264 | 0 | A | T | 93.1% | 81.1 / NA | 29 | I261I (ATT→ATA) | allE | (S)‑ureidoglycine aminohydrolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (16/11); minor base G (0/2); total (16/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCCTTACCTTTAAAGCGGATGCGATTTATATCGCATAAGAGTGCAGTACTCATGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTAAATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCGTGGCTGGCACCTGGT > NC_000913/543033‑543486 || aCCCTTACCTTTAAAGCGGATGCGATTTATATCGCATAAGAGTGCAGTACTCATGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTa < 1:148069/250‑1 (MQ=255)aCCCTTACCTTTAAAGCGGATGCGATTTATATCACATACGAGTCCATTACTCATGCCGGAAGAGGCATGA‑GTACCATATCCTTCCTGAAAATCGAGCAAATTCTATATATTGCAGAGCTCATGTAGGCCTGATACGCGAAGCGCATCAGGAAATGTTACAAAAAAAGCCACGGTATAAAACGTGGCAAAATCCAACATAGCTAAAAATAATCAAGAGAGTGGAATGACTTGTATCTCTACGTCGCgggat > 2:148069/1‑247 (MQ=255) cGATTTATATCGCATAAGAGTGCAGTACTCATTCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGACCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCAACGGAATAAACAGTGGCAAACTCCAACATAGCTAAAAATAATCAGGCGAGTGGAATGAATTGTATCACTACGTCGCGGTTACAATCTTTCGAGTAAAAATAGCt > 2:301410/1‑251 (MQ=255) tttATATCGCATAAGAGTGCAGTACTCATGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCTCATCAGGCAATGTTACAAAAAAAGCCACGGAATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAATGGTATGAATTGTATCTCTACGACGCGGTTACAATCTTTAGAGTAAATATATCTGa > 2:284213/1‑250 (MQ=255) aaGAGTGCAGTACTCATGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAACGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACg > 2:305390/1‑251 (MQ=255) aCTCAGGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCAt < 1:259035/251‑1 (MQ=255) cTCATGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCAt > 1:88686/1‑250 (MQ=255) cagCCGGACGCGGCA‑GACGTACCAGAACCTGCCTGAAAATCGCTCAAAATCTATATATTGCAGAGATCATGTAGGCCTTATAAGCGAAGCTCATCAGGCAATGTTACAAAAAAATCCACGGTATAAACCGTGGCAAAATCCATCATAGCTAAAAATAATCAGTCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCCTCTCCACGACCTACACCaacccc < 2:228212/249‑6 (MQ=255) cGGATGCGGCCTGA‑GTACCATAACCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGAGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCAAACATAGCTAAAAATAATCAGGCAAGTGGTATGACTTGTATCTCTAAGTCGCGGTTACCATCTTTCGAGTAAATATAGCTGAACGCTTCCCCCCGCACAACACCATAACCAGcc > 2:88048/1‑251 (MQ=255) gcAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCtttt < 1:267914/251‑1 (MQ=255) atTGCAGAGCTAATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAACGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGAGGAATGACTTGTATCTCTCCGTCGCGGTTACAATCTTTCGAGTAAAAATAGCTGAACGCTTCACCACGCCCTACACCATAACAAGCCTGTAAAGAATACGCGCCCATAAAGATGTAATCGCCTTTTTTCAACGGGATcc > 2:141563/1‑251 (MQ=255) atTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAACAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATcc > 1:227219/1‑251 (MQ=255) gATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCCCCTTTTTTCCCCGGGATCACGTTATTGACGAGGTTATAAAc > 2:7488/1‑251 (MQ=255) agcgCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGTCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATACCCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGAcc < 2:88686/251‑1 (MQ=255) cATCAGGCAATGTTACAAAAAAAGACACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGCGGTTATAAACCCCCTGACCGGa > 2:177492/1‑250 (MQ=255) gCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAata < 1:7488/251‑1 (MQ=255) aCAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCAcc < 1:305390/251‑1 (MQ=255) aGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCt < 1:177492/251‑1 (MQ=255) aaaCCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTCTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTg > 1:43945/1‑241 (MQ=255) aaaCCGGGGCAAAAACCAACATAGCTAAAAATAATCAGGCGAGTGGAATGACTTGTTTCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATTTAATCGCCTTTCTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTg < 2:43945/241‑1 (MQ=255) gCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGCACGCTTCACCACGACCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGatat > 1:61276/1‑250 (MQ=255) aaTCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAg < 2:111531/215‑1 (MQ=255) aaTCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAg > 1:111531/1‑215 (MQ=255) aTCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTAGAGTAAATATAGCTGAACGCTTCACCCCGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCCTAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCgg > 2:294951/1‑250 (MQ=255) aaCATAGCTAAAAATAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCGtggct < 1:141563/251‑1 (MQ=255) aaaaaTAATCAGGCGAGTGGTATGACTTGGATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTGCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCGTGGCTGGCACCt < 2:227219/249‑1 (MQ=255) aaaaTAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCGTGGCTGGCACCTGGt > 1:237661/1‑251 (MQ=255) aaaTAATCAGGCGAGTGGTATGTTGTGGATCTCTACGTCGCGGTTACAATCTTGCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGAGATAACCGtggctg < 2:19090/241‑1 (MQ=255) aaaTAATCAGGCGAGTGGTATGACTTGTATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCGtggctg > 1:19090/1‑241 (MQ=255) || ACCCTTACCTTTAAAGCGGATGCGATTTATATCGCATAAGAGTGCAGTACTCATGCCGGATGCGGCATGA‑GTACCATATCCTTCCTGAAAATCGCGCAAATTCTATATATTGCAGAGATCATGTAGGCCTGATAAGCGAAGCGCATCAGGCAATGTTACAAAAAAAGCCACGGTATAAACCGTGGCAAAATCCAACATAGCTAAAAATAATCAGGCGAGTGGTATGACTTAAATCTCTACGTCGCGGTTACAATCTTTCGAGTAAATATAGCTGAACGCTTCACCACGCCCTACACCATAACCAGCCTGTAAAGAATAAGCGCCCATAAAGATGTAATCGCCTTTTTTCACCGGGATCCAGTTATTGTCGAGGTTATAAACCCCCTGACCGGAAAGAATATAGGCACCGTGTTCCTGAACGTGTGTTTCGATATAACCGTGGCTGGCACCTGGT > NC_000913/543033‑543486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |