| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,432,105 | C→T | L120L (CTG→CTA) | smg ← | DUF494 domain‑containing protein Smg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,432,105 | 0 | C | T | 93.1% | 77.8 / ‑0.5 | 29 | L120L (CTG→CTA) | smg | DUF494 domain‑containing protein Smg |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (14/13); total (15/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01 | |||||||||||
AATAACCAGTTCAGCCCCGCACTTTGGGCAGGACTCATTATTACGCACCGTGAACAGTGCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCCAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCATAGCAGGGCATTGTAGATATC > NC_000913/3431891‑3432350 | aaTAACCAGTTCAGCCCCGCACTTTGAGCAGGACTCATTATTACGCACCGTGAACAGTGCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCCGCATACCTTCTTTCACTTCCAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCTGATCATCTCGTTCGAACTCTCCGTTATCCAGCTCGAGCACTCGc > 1:207415/1‑251 (MQ=255) ccGCACTTTGGGCAGGACTCATTATTACGCACCGTGAACAGTGCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCAc > 2:334001/1‑251 (MQ=255) cATTATTACGCACCGTGAACAGTGCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCa < 1:115594/250‑1 (MQ=255) ttattaCGCACCGTGAACAGTGCTGATTTAGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCt > 2:205292/1‑251 (MQ=255) aaCAGTGCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAgg > 1:327595/1‑250 (MQ=255) gCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCa < 1:214704/251‑1 (MQ=255) gATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAg < 1:240621/249‑1 (MQ=255) gATTTCGCCATAACAACTTATGCGGAATTAAAGAAATGATTAATGCAGCATAGCTTCATTGACTTCAAGGAGTAATTCTTCCATTTGCTGGGACGCATTTTCGCAGGCCGGAGGATTGAACACCACCGTCAGAATCACCCCGTTCAGATCATCTAATTCGAACTCTGCGTTATCGAGCGGGAGCACTCGCTCTATCACCATTTCACGAGTCTCGAGGTTGTGCACCGGAATcgggtcagggataatcata > 1:325244/1‑232 (MQ=255) aTTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGATCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGaaa < 1:84767/251‑1 (MQ=255) aGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTcac > 1:305256/1‑250 (MQ=255) aaaTGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACAct > 1:40308/1‑251 (MQ=255) gATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGTAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTc < 1:122262/251‑1 (MQ=255) tAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCTCCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCg < 1:271617/250‑1 (MQ=255) aTGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGgtg > 1:183788/1‑251 (MQ=255) cagcaTACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGtat < 1:205292/251‑1 (MQ=255) aatagaaattttctcATTTGCTGGAACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCCCCCATTTCAGAACATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACGCGCTCTATCACAATTGCACGAGTTTCAAGGTTGTGCACCTGAATCTGCTCAAGGAAAAGCAGAATCCCACGGCAGCTGGCATCCAGTCGTTCACTCTCTTCCGGTGTTTAAATACGCATGGGGAGATGATc < 2:200153/237‑1 (MQ=255) gagTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGTCCGGAATATTGAACAACACCATAAGGATCACACATTTCAGATCATACAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCAACGGCAGCTGGCATCAAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCg > 2:153620/1‑251 (MQ=255) ttcttcCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGgag > 1:118649/1‑235 (MQ=255) gtcttcCAGTTGCTGGTGCGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCAGCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTAGCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGgag < 2:118649/234‑1 (MQ=255) tcCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATGTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAg < 2:40308/248‑1 (MQ=255) agtgtctcAGCCCGGAATATTGATCAACACCATCAGGAGCACCCATGTCAGAGCATCTATTTCGAACTCGGCGTTAACCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGGTGAGCAACTGAATCTGCTCAAGGAAAAGCAGAAACCCACTGCATCTGGCATACAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCTAGTGGCATCGGTTCTGCAAAcc < 2:225801/244‑1 (MQ=255) ttGAACAACACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGATTCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCGTCCTGCTAATCAGCa > 1:150900/1‑249 (MQ=255) acaatcttgaacAGGTTCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATACAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCACGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCTGTCGTTCACACTCTTCAGGAGTATAAATAAGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGGTCTGCCAACCATTCCTGAAAATCAGCAAGttt > 2:188519/12‑251 (MQ=255) aacaacACCATCAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGttt > 1:239731/1‑251 (MQ=255) cAGGATCACCCATTTCAGATCATCTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCAt > 1:240777/1‑250 (MQ=255) ccccccATTTCAGATCATCTAGTTCGACCCCTGCGTTATCCAGCGCGAGCCCTCGCTTTATCCCCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCATAGCAgg < 2:327595/248‑1 (MQ=255) cccATTTCAGATCATCCAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGTGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCATAGCAGGGCa < 1:58067/251‑1 (MQ=255) cccATTTCAGAACATCTAGTTCGAACGCTTCGTTATCCAGCGCGAGCACTCGCTCTAGCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTGCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCATAGCAGGGCa < 1:331040/251‑1 (MQ=255) tcatcTAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCGCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGACAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCATAGCAGGGCATTGTAGATAtc > 1:181367/1‑251 (MQ=255) | AATAACCAGTTCAGCCCCGCACTTTGGGCAGGACTCATTATTACGCACCGTGAACAGTGCTGATTTCGCCATAACAACTTATGCTGAATTAAAGAAATGATTAATGCAGCATACCTTCATTCACTTCAAAGAGTAATTCTTCCATTTGCTGGTACGCATTTTCGCAGCCCGGAATATTGAACAACACCATCAGGATCACCCATTTCAGATCATCCAGTTCGAACTCTGCGTTATCCAGCGCGAGCACTCGCTCTATCACCATTTCACGAGTTTCAAGGTTGAGCACCTGAATCTGCTCAAGGAAAAGCAGAAACCCACGGCAGCTGGCATCCAGTCGTTCACACTCTTCCGGTGTATAAATACGCATGGAGAGAGGATCCGAGGCCAGTTGCATCGGTTCTGCCAACCCTTCCTGATAATCAGCAAGTTTTTCCAGCCATAGCAGGGCATTGTAGATATC > NC_000913/3431891‑3432350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |