| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,309,321 | A→G | T616T (ACT→ACC) | pnp ← | polynucleotide phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,309,321 | 0 | A | G | 94.4% | 103.7 / ‑1.5 | 36 | T616T (ACT→ACC) | pnp | polynucleotide phosphorylase |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (20/14); total (22/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 | |||||||||||
GCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCAGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGATATCGCCACGCGGCGCGTTGATCGCCTGTTCCATTACGC > NC_000913/3309086‑3309565 | tcTCAGTCGCTTCTTTAATGCTCAGACGGATACAGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGa < 1:258196/248‑1 (MQ=255) ccAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATacg < 1:280756/250‑1 (MQ=255) cAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACATTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATac < 1:235252/249‑1 (MQ=255) ttAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGGATAGCATg > 2:132812/1‑251 (MQ=255) ttAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCACCGCCGATGGCAACAAAAGCGCCACAGTCAACGATACGGGTCACTTTCCCCGTGTAGACGCGGCCCACTTCGATTTCTGCGCTGCTCTCTTCGATACGACGAATAGCATg > 2:69107/1‑251 (MQ=255) cAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCtt < 1:132631/251‑1 (MQ=255) gatccgtcccTGGCGATCAACTTCCAGATTTTTCACCGGTACTTCCTGACCCATCTGCAGTTAATCGGGCTCTTTCTCAACTCGTTTTTCA‑GCGATTTGAGAGAGGTGGACCAGACCTTCTTTACCGCCGCCGTTGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTTCCAGTGTAGACGCGGCCCACTTCGATGTCTGCGGTGATTTCTGCTATACGACGAATAgaattttgcgctggctcgc < 2:342986/244‑19 (MQ=255) atacagaccTGGAGAACAATTTCCAGAACTTTCACCGTTACTTCCGGAACCATCTCCAGGTAATCGGTAACTTGCTCAACGCGTTT‑TCAAGCGATTTTAAAGATGTGGACCAGACCTCCTTTACCGCCGCCGATGGCAACAAAAGCGCAAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGcc < 2:257802/244‑1 (MQ=255) ggCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCt < 1:80947/251‑1 (MQ=255) ggCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGAAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCAAAAGTCAACGATAAGGGTCACTTTACCAGTGTAGACGCGCCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCAGGTTTCGCTTTCTCGCCGTCGGTCGcc > 2:124390/1‑250 (MQ=255) cAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATc < 1:199066/251‑1 (MQ=255) tCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCttcgatttc > 1:346215/1‑251 (MQ=255) gACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GAGATTGGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGACCGCTTCGATTTCTGCGGTGATCTCTTCGAGACGACGAATAGCATGTTTCGCGTGCTCGCCGGCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGAtg < 1:36499/251‑1 (MQ=255) gCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTCACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGcc > 1:26439/1‑250 (MQ=255) aGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAACCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGGGCCAGt > 1:299334/1‑251 (MQ=255) ggTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCgg > 1:99294/1‑251 (MQ=255) aaCGCGTTTGTCC‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACggt > 1:87203/1‑250 (MQ=255) aaCGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACgg > 1:94553/1‑250 (MQ=255) gcgTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGAtt > 1:139886/1‑250 (MQ=255) cGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAGATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGGTACGGCGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCCGTCAGAGCCCGGATTAcgaaacggcct > 2:240950/1‑241 (MQ=255) aTTTGAGAGATGTGGACCAGACCTTCTTTCCCGCCGCCGATGGAAACAAATGCGCAAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTCCGATCCGACGAATAGCATTTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCTTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCttt < 1:124390/251‑1 (MQ=255) gagagaTGTGGTCCAGATCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCAGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCg > 1:157668/1‑251 (MQ=255) gccgccgATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGCTTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCgagctgt > 2:274856/1‑245 (MQ=255) cccgATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGGGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTCCCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCt < 1:159418/250‑1 (MQ=255) gaaacaaACGCGCCAAAGTAAACGATACGGGTCCCTTTCCCTGTGTAGACGCGGCCCCCTTCGATCTCTGCGGTGATCTCTTCGATACGCCGAATAGCATGTTTCGCTTTCTCGCCTTCGGTCGCTGCAATCTTCACAGTACCGTCATCTCCGTTTTCGATGGGGGTGCCAGTTTCTCCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGt < 1:318722/249‑1 (MQ=255) cgcCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGCTCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCCTCTTCGATTTCGATGGTGGTGCCAGTTTATTCGGTCAGAGCAAGGATTACAGAACAGCCTTTCCCGACAACATCTTTGATCTTGTCCGGGGTGATCTTGTTGGTATgtcaacgc > 2:81090/1‑244 (MQ=255) gTCAACGATCCGGGTCACTTTACCAGTGAAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCCCAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGa < 1:132812/251‑1 (MQ=255) cGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGCGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCTATGGTGGTGCCAGTTTATTCGGTCAGAGCACGGATTACAGAACCGTCTTTACCGATTACATCTTTGATCTTTTCCGGGTTGATCCTGCTGGTCTGGAAACGCTGTGCGAACTCagagtt > 2:7707/1‑249 (MQ=255) gggTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCAGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCTTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGat > 1:104436/1‑250 (MQ=255) ggTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACAGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGCGatat > 1:254232/1‑251 (MQ=255) ccAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTg > 1:196478/1‑226 (MQ=255) cAGTGTAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGATATCACCACgcggc > 2:92554/1‑251 (MQ=255) tgtAGACGCGGCCCACTTCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCTCCGTCGGTCGCGGCAATCTTCACAGTACCGTCATCTTCGTTTTCGTTGGTGGTGCCCGTTTCTTCGGTCAGAGCACGGCTTACAGAACCTCCTTTACCGTTAACATCTTTGATCTTGTCCGGCTTGATATTGATGGTATGGATACGCGGTGCGAACTCCGAGATATCGCCCCGCGGagcg > 2:259094/1‑251 (MQ=255) cgcgGCCCATTTCGATTTCTGCGGTAATCCCTTCGACCCGACGAATAGCATGTTTCCCTTTCTCGCCGTCGGTCGCTGCAATTGTCACAGTACCGCCTTCTTCGATTCCGATGTGGGTGCCAGTTTCTTCGTTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGATATCGCCACGCGGCGCGTTGATc < 2:139886/251‑1 (MQ=255) ttCGATTTCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTAGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGATATCGCCACGCGGGGCGTTGATCGCCTGTTccc > 2:338721/1‑250 (MQ=255) ttCTGCGGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCCTCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGCTAACATCTTTGCTCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGATATCGCCACGCGGCGCGTTGATCGCCTGTTCCATTACGc > 1:75740/1‑251 (MQ=255) | GCTCAGTCGCTTCTTTAATGCTCAGACGGATACGGCCCTGGCGATCAACTTCCAGAACTTTCACCGGTACTTCCTGACCCATCTGCAGGTAATCGGTCACTTTCTCAACGCGTTTGTCA‑GCGATTTGAGAGATGTGGACCAGACCTTCTTTACCGCCGCCGATGGCAACAAATGCGCCAAAGTCAACGATACGGGTCACTTTACCAGTGTAGACGCGGCCCACTTCGATTTCTGCAGTGATCTCTTCGATACGACGAATAGCATGTTTCGCTTTCTCGCCGTCGGTCGCTGCAATCTTCACAGTACCGTCATCTTCGATTTCGATGGTGGTGCCAGTTTCTTCGGTCAGAGCACGGATTACAGAACCGCCTTTACCGATAACATCTTTGATCTTGTCCGGGTTGATCTTGATGGTATGGATACGCGGTGCGAACTCAGAGATATCGCCACGCGGCGCGTTGATCGCCTGTTCCATTACGC > NC_000913/3309086‑3309565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |