| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,941,904 | G→A | H222Y (CAT→TAT) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,941,904 | 0 | G | A | 97.3% | 113.2 / ‑3.9 | 37 | H222Y (CAT→TAT) | gcvA | DNA‑binding transcriptional dual regulator GcvA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (16/20); total (17/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.16e-01 | |||||||||||
AACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGCCAC > NC_000913/2941661‑2942141 | aaCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTaaa > 2:274815/1‑250 (MQ=255)aaCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTaaa > 2:210153/1‑250 (MQ=255) gAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTaaaaa < 1:181049/249‑1 (MQ=255) gAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCtt < 1:150868/251‑1 (MQ=255) cTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAATGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACg > 2:106967/1‑251 (MQ=255) agcagcGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCAGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGatat > 2:93790/1‑251 (MQ=255) cagcGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATg > 1:50368/1‑250 (MQ=255) aTTTTTCCCATTTCTGCCTGACTGTCATTACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACTTCCGGCCTCGATTTCAGAGTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAGCTGTCGGGTATATTTCTGCCAGTCACg < 2:348429/251‑1 (MQ=255) aTTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCAc < 1:210153/250‑1 (MQ=255) cAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAg < 1:274815/251‑1 (MQ=255) gTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGca < 1:225614/251‑1 (MQ=255) gACTGTCATGACAAACCATATAAAAAGCATTTTGACTGACTAGAACATCATGTAACGGGCAAACAAGACGGCCGGCCTCGATTTCAGATTGCGCCACCTCGTGATTTGCCAGCGCCTCTCCCTGCCCTTGGATAGCCTCTTGCAGCTCCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGtaat < 2:306039/251‑1 (MQ=255) aCTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTTTATGTCTGCCAGTCACGGCGCGAAGCATCATGtaat > 1:178896/1‑250 (MQ=255) aCTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGtaat > 1:311938/1‑250 (MQ=255) cATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGt > 1:205094/1‑250 (MQ=255) cATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTa < 1:28502/251‑1 (MQ=255) aTGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTCTTTGTCTGCCAGTCACGGCGCGAAGCCTCCTGTCATAAAGTAt > 2:297970/1‑251 (MQ=255) aacccAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTa < 2:205094/248‑1 (MQ=255) aCCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGc < 1:119250/251‑1 (MQ=255) aCTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAAc > 1:266170/1‑172 (MQ=255) aCTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAAc < 2:266170/172‑1 (MQ=255) cAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGtt < 1:297970/251‑1 (MQ=255) aaaCATCATTAAACGGGCAAACAAGACGGCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACGGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGtttt < 2:311938/250‑1 (MQ=255) aaCAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTACCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAgcg < 2:50368/251‑1 (MQ=255) ggCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGACGCTTGCAGAACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCACAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTAACGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCg > 1:149281/1‑251 (MQ=255) gATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGaa > 1:300482/1‑160 (MQ=255) ttttCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTACCTGCCCGTGGCTAGCCGCTTGAAGCACCATGGCGCTATAGCTAAATATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCTGGCATATGTCTGCACGTAAAGGCGCGAAGCATCATGTAATAAAGTATGTTTAGACAGATCTTACGGTGTATTAAAGGGATTTTCACCTGTCAACATTAGCGACGCACACACCGGCaata > 2:314143/2‑250 (MQ=255) cAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAatat > 1:187550/1‑251 (MQ=255) aGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATAtt < 1:256956/251‑1 (MQ=255) tCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGt < 1:211481/164‑1 (MQ=255) cACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAgg < 2:253103/173‑1 (MQ=255) cACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAgg > 1:253103/1‑173 (MQ=255) tcccGTGGATTGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAGTGGGCCCCTTCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGTCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCTGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTTGCGGCTAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGtt < 2:110601/249‑1 (MQ=255) cccGTGGATAGCCGCTTGCAGCACCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACCCACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGc > 1:13628/1‑251 (MQ=255) gcagcaCCATGGCGCTATAGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATc < 1:4111/251‑1 (MQ=255) cagcaCCATGGCGCTATATCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCg < 1:70100/251‑1 (MQ=255) aCCATGGCGCTATAGCTAAAAATTGGCTCTTGCTGAACGTTGATATGATTTAACCCCAACTGTAGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCAAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACCCACCGGCAATAAATATTCGGCGTACAGTTTTTCCCCCCGTAACCCCGACCAGTTGCCCCGACCATAACATATCGCcac > 2:300380/1‑251 (MQ=255) | AACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCAGAACATCATTAAACGGGCAAACAAGACGTCCGGCCTCGATTTCAGATTGCGCCATCACGTTATTTGCCAGCGCCACTCCCTGCCCGTGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGCCAC > NC_000913/2941661‑2942141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |