| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,531,689 | A→G | intergenic (‑1185/‑127) | yncO ← / → ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,531,689 | 0 | A | G | 91.3% | 57.8 / ‑2.7 | 23 | intergenic (‑1185/‑127) | yncO/ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (11/10); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑AAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTC > NC_000913/1531446‑1531931 | aGGATATTGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCAc < 1:230227/251‑1 (MQ=255) gatAAAGAATGTGCACAAGCTATCAGAGCGCACTGGCTGATCGAGCACATTCTGCATGGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTTGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAATACATTAAGGGTGAAGAGGAAAAGAAAGAAAGCTGCTTTAAACACAGGGAAAGATCATCAG‑AATTTCGCTTTTTGTACTa < 2:168178/249‑1 (MQ=255) aTTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTc > 1:5268/1‑251 (MQ=255) aTCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGttt < 1:48813/251‑1 (MQ=255) cACTGGCTGATCGCGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGAACTAAACAAt > 1:88338/1‑227 (MQ=255) aGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTAc > 1:216047/1‑251 (MQ=255) gCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTCAGAGATTGCAAAGACATTAAGGGCGTAGAGGAAAAGTAAGAAGGCTGCGTTAACCACAGGGAAAGCTCATCAG‑GAGTTCACTTTTTGAACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAGGCTGTTTTTTATTGCTTACACATGATCAACTGCTCCTTAc > 1:269104/1‑250 (MQ=37) gCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACa < 1:323739/251‑1 (MQ=255) ggAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGAAGAAc > 1:301635/1‑251 (MQ=255) ggAAACGCAGACGAAATAAGAGCTGGAAGTAAGGATATGGTACTGAATTTATTAAGAGATTGCAAAGACACTAAGGGTGGAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAATGATCATCAGTATGTT‑GCTTTTTGTACTAAACAATTCGCGTTGTATGTTTAAAAATTGTGATATTCCTTATTACCTAAAGAGGTTTTTTATTGCTTACTCATGTTCAAATACTCCTTACATAATTGAGGAGaag < 2:77540/251‑2 (MQ=255) aataTCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTaaaaa < 1:194895/251‑1 (MQ=255) aTGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAAt > 2:110353/1‑220 (MQ=255) aTGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAAt < 1:110353/220‑1 (MQ=255) aTTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACa > 1:286028/1‑191 (MQ=255) aTTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACa < 2:286028/191‑1 (MQ=255) aTTGCAAAGACATTAAAGGTGAAGAGGACAAGTAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGCTATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATT‑TCACACGATTACAGACaa > 2:127291/1‑250 (MQ=18) acgacgcccttccgaactagagGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCTCTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAAGTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTg < 2:25366/233‑1 (MQ=18) ggTGAAGAGGAAAAGAAAGAATGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGTTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACAt < 1:156257/251‑1 (MQ=255) agagGAAAAGAAAGAAGGCTGCGTTAAACACATGGAAAGATCATCAG‑GAGTTCACTTTTTTTACTAAACAATTTGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGTGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACATAAGtt < 2:5695/251‑1 (MQ=255) agagGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTgagatcggaagagcaacgt > 1:25366/1‑233 (MQ=255) aagaaagaAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACATAAGTTATCGGat > 1:48062/1‑251 (MQ=255) cTGCGTTAAACACAGGGAAAGATCATCAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACATAAGTTATCGGATATTCTACTGtt > 1:115762/1‑251 (MQ=255) atcatcAG‑GAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTc < 1:193008/251‑1 (MQ=255) | AGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAG‑AAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGGACATATTTCTATTATC‑CCCGATTACAGACAAGCCTGGAAAATGGAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTC > NC_000913/1531446‑1531931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |