| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,374,498 | G→T | G137C (GGC→TGC) | ycjP → | putative ABC transporter membrane subunit YcjP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,374,498 | 0 | G | T | 86.1% | 86.8 / 0.4 | 36 | G137C (GGC→TGC) | ycjP | putative ABC transporter membrane subunit YcjP |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base T (18/13); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGCATTACGTCGACATTTTTAACCCGATGATTTTCCCGTTTGT‑CGACTACTTCCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTAT > NC_000913/1374258‑1374731 | gAGCTTTACGTCGACATCTTTACCCCGATGATTTTCCC‑TTTGTTCGTGTTCTTCCGTAACAGGCTGGTGGT‑GTTTTTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCTATTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGa < 1:255806/251‑1 (MQ=255) aGCATTACGTCGACATTTTTAACCCGATGATTTTCCCGTTTGT‑CGACTACTTCCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGCCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGac > 1:96323/1‑251 (MQ=255) tacgtctccttttttaccctggtgatTTTCCCGTTTTC‑CGACTCCTTCCTTAACAGTCTGGTGGT‑GTCTTTGGGTTCATCCTTGGTGGCGGTATCCCTCGGCATTCTTGGGGCGTTCGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCATCGCCAGCTTTTACACGGTGTATATGTTCTCTTGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTg < 1:310970/228‑1 (MQ=255) ttttAACCCGATGATTTTCCCGTTTGT‑CGACTACTTCCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTg > 1:241151/1‑250 (MQ=255) tttAACCCGAAGATTTTCCAGTTTGA‑CGACTACTACCGTAACAGACTAGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACTGGCTTTCCAGCCTTCGCTTTCAAGATCGGTAGGCCATCAAAGCCCGCTTTTACACTGTGTATCTTGTCTCTTGAATTTCG‑CTGGTGGTGCCGACTTACACAATCATCACCGCACTTTTCAATTTCGACACTgagtatgaactgat > 2:217882/1‑240 (MQ=255) tcctgTTTGT‑CGACTTCTTCCGTAACAGTCTGGTGGTTGT‑GGTGTGTTCGTCCGGGGTGGCGGTATTCCTCGGCATTCTTGGGGCTGACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGAc < 1:287775/246‑1 (MQ=255) ccGTTTGG‑CGCCTAATTGCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGCCATTCTTGGGGCTTCCGCGCTTTCCCGCCTGCGCTTTACAGGACGGATGACCCTCAACGACAGATTTTTCACGGTGTATATGATCTCTGGCATTTTG‑CTGGTGGTGGCACTTTTTAAAATCATCACAGCGGTTTGTATTTACGACAATGACATGACGCTGatcatgcccacggaggcgc > 2:316611/1‑236 (MQ=255) gT‑CGACTACTTCCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAActc < 1:190638/250‑1 (MQ=255) ctTCCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTT‑CCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCAccgc > 1:108494/1‑251 (MQ=255) cTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCt > 1:251392/1‑251 (MQ=255) gt‑gtCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGaaa > 1:266668/1‑249 (MQ=255) tttCATCCGTGGTGGCGGTATTCCTCGGTATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGac > 1:153217/1‑251 (MQ=255) cgtCCGTGGTGTCGGTATTCCCCGGCTTTCTTGGGGTTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACAcc < 1:28294/249‑1 (MQ=255) ggCGGAATCCCTCGGCTTTCTTGGGCCTTCCGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACTCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCTCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTGCGACACCATCCCCGATg < 1:91463/251‑1 (MQ=255) aattcccgggatgtctgggggCTTTCGCGTTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTAAACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCCCCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCAACTTCGACACCATCCCCGATGAGATc < 1:281810/234‑1 (MQ=255) actcttgggtctgtcacgtgttCCCGCGTGCGCTTTTATGTTCGATTGACCGACAACGCCAGCTTTTACATGTTGTATAT‑TTCCCCGGCCTTTTGGCTGGTGGGGCCGCTTTTCAAAATCACCTCTGCTCTTTCCATTTCCTGCACTAAGTTGGTGCTGATCAGCCCCATGTTGACGCAACCTCTTCCCGCCGTCGTGTTTATGCTGAAAAGCTACTGCGACACCATCCCCGATGAGATCGAAGAAgcggc < 2:11900/231‑1 (MQ=255) gcgcTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATGTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGAGCTGATCATCAACATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGCTGAGATCGAAGAAGCGGCGATGATGGATGGCCt > 1:318059/1‑251 (MQ=255) gcTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGAGTATATGTTCTCTGGCATTTTG‑CTGGAGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGATGAAGCGGCGATGATGGCTGGCCTc > 2:17204/1‑250 (MQ=255) ccccGCCTGCGGTTTGAAGGTCGGATGACCATCACCGCCAGTTTTTACACGTTTTATTTGTTCCCGGGATTTTTG‑CTGGTGGTGCCGCTTTTCAACATCCTCACCGCGTTTTGCATTTACGACCTTGAGATGGCGCGGATCATCACCATGGTGACGCAAACTCTGCCTACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCg < 2:248040/250‑1 (MQ=255) cGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCt > 1:78468/1‑251 (MQ=255) gcgcTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCaa > 1:258005/1‑250 (MQ=255) cgcTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAAt > 1:2007/1‑251 (MQ=255) aaGGTCGGATGACCATCAACGTCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑TGGGTGGTGCCGCTTTTCAAAATCATCACCGTGCTTTGCATTTACGACACTTAGATGGCGCTGATCATCCCCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc < 1:328917/251‑1 (MQ=255) ggTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCTTCCCCGATGAGATCGAAGGAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc > 2:6079/1‑249 (MQ=255) ggATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATc > 1:193938/1‑251 (MQ=255) gACCATCAACGCAGGTTTTTACACGTTGTATATTTTTTCTGGCCTTTTG‑CGGGTTGTGCCGCTTTTCAAAAGCATCACCGCTCGTGGCATTTACGACACTGATATGGCGCTGATCATCACCAATGTGACGCAAACTCCGCCCACCGCCGTTTTTATTCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGTATCAcc < 1:349527/250‑1 (MQ=255) ttttcgcGGTGTATCTGTTCTCTGGTATTTTG‑CGGGGGGTGTCGCTTTTCAAAATCATCCCCGCGCTGGGCTTTTACGACCCTGTGATGGCGCGGATCCTCTCCAGGGGGACGAAAACCCTGCCCTCCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTc < 2:96323/244‑1 (MQ=255) acacGGTGTAGTTGTTCTCTGGCATTTGT‑CTTGTGGTGCCGCTTTCCAAAATCATCCCCGCTCGTGGATTTTACGACACTGGGATGGCGCTGATCATCACCATGGTGACGCAACCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGATACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCggg < 2:2007/251‑1 (MQ=255) tataTGGTCTCTGGAATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCCTCGCGCTTTTCATTTACGAAACTGATATGGCGCTGTTCATCACCATGGTGACGCATACTCTGCCCACCGCCGTGTTTATGATGACAAGCTACTTCTACACAATCCCCGATGTTATCGAAGAAGCGGCGATGATTGATGTCCTCAAACGTCTGCAAATTAACTTCCGCTTCCCCGTTCCGTTTGCTATGTCCGGGCTGATATc > 2:198188/1‑251 (MQ=255) gTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCACAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGCGATCGAAGAAGCGGCGATGATGGATGGCCTCCCCCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGCTGTCCGGGCTGATCTCCgttt > 2:295610/1‑249 (MQ=255) cATTTTG‑CTGGGGGTTCCGCTTTGCAAAATCATCACCGCGCTTTGCATTTCCGACACTGTGAGGGCGCTGCTCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACt < 1:249695/251‑1 (MQ=255) ttgg‑CTGGTGGTGCCGCTTTCCAAAAGCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCAGGAGGACGCAAACTCTGCCCGCCGCCGTGTTTATGCTTAAAAGCTACTTCGACACCATCCCCGATGAGATCGAATAAGCGGCTATGATGGATGGCCTCAACCGTCTGCAAATTAGCTGCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGc < 1:316611/247‑1 (MQ=255) gtggtgCCGCTTTTCAAAATCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTAtggg > 1:81670/1‑250 (MQ=255) aaaaTCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACt > 1:314728/1‑250 (MQ=255) aaaTCTTCCCCGCGCTTTGCATTTACGGCCTTGAGAGGGCGTTGTTCACCACCAGGGGTACGTAACCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAATAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTTTCGTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTAt < 2:241151/251‑1 (MQ=255) aaaTCATCACCGCGCTTTGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCtt > 1:161374/1‑172 (MQ=255) | GAGCATTACGTCGACATTTTTAACCCGATGATTTTCCCGTTTGT‑CGACTACTTCCGTAACAGTCTGGTGGT‑GTCTGTGGTTTCATCCGTGGTGGCGGTATTCCTCGGCATTCTTGGGGCTTACGCGCTTTCCCGCCTGCGCTTTAAAGGTCGGATGACCATCAACGCCAGCTTTTACACGGTGTATATGTTCTCTGGCATTTTG‑CTGGTGGTGCCGCTTTTCAAAATCATCACCGCGCTTGGCATTTACGACACTGAGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGCGATGTCCGGGCTGATATCCGTGTTCGTCTACTGCTTTATGGTGGCGTGGAACGACTAT > NC_000913/1374258‑1374731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |