| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,306,736 | 0 | T | G | 90.0% | 19.6 / ‑6.4 | 11 | S325A (TCC→GCC) | oppF | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (3/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGATGAGGTCTACCACAATCCACTACATCCTTACACCAGGGCATTGATGTCGGCAGTCCCCATACCTGATCCGGATCTGGAGAAGAACAAAACCATCCAGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACTCCGTTTCTTGCCTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAA > NC_000913/1306509‑1306964 | atgatgAGGTCTACCACAATCCACTACATCCTTACACCAGGGCATTGATGTCGGCAGTCCCCATACCTGATCCGGATCTGGAGAAGAACAAAACCATCCAGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACGCCGTTTCTTGCCTGAAAGTCGAt < 1:268588/251‑1 (MQ=255) aTGTCGGCAGTCCCCATACCTGATCCGGATCTGTAGAAGAACAAAACCATCCAGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACGCCGTTTCTTGCCTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCAGCCCTTTTTCACg < 1:260133/251‑1 (MQ=255) gagaACAACAAACCCATCAATTTTCTGGAAGGGACATTCCCGTCGTAGAACAACCCGCCGTCCGGTTGTTTTTTCC‑TACCCCTTTGCCCGATTGCTGGTCCTGATTTCTTCAAAACTCGTCTTTTTCTGGAGGGGAGTTCCAGACACGCCGTTTCTTGCCTGAAAGTCGATCCTCTTTAAAAACAATAAGGGCTGACAGTTGTCAGCCCTGGTTCACGCTAAAAGCGATTATTTATTCCCGCCAgatgat < 2:300946/250‑1 (MQ=255) gaaCAAAACCATCCAGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACGCCGTTTc > 1:172179/1‑150 (MQ=255) gaaCAAAACCATCCAGTTACTGGAAGGGGAATTACCGACGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACGCCGTTTc < 2:172179/150‑1 (MQ=255) aaaCCATCCAGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACGCCGTTTCTTGCCTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCAGCCCTTTTTCACGCTAAAAGCGCTTATTTATTCCCGCCAGCTGATATGGCaa > 1:260072/1‑247 (MQ=255) aGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GATGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGCGTTTCAGACACACCGTTTCTTGACTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCATCCATTTTTCACGCTAAAAGAGATTATTTATTCCCGCCAGATGATATGGCAAAGGTTGTAATCtt > 2:261140/1‑251 (MQ=255) ttACCGTCGCCGATCACCCCGCGTTCCGGTTTTTTTTCCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACTCCGTTTCTTGCCTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAg < 1:34346/250‑1 (MQ=255) gTTGTGTGTTCCGGACCC‑GGTGCCCGATTGCCGGTCCAGAGTGCGCAAAAACACGTCCTTTTCTGGAGGGGTGTTTCAAACGCGCCGTTTCTTGCCTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGGCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGAGATGGCAAATTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCAc < 2:332542/251‑1 (MQ=255) gTACCC‑GTTGCCCGATTGCCGGTCCAGCGTGCGCCAAAAAACGTCCTGTTCTGGAGGGGAGTTTCAGACCCGCCGTTTCTTGCCTGAAAGGCGATCCGCTTTAAAAACAATCAGGGCAGGCAGTTGTCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGGGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGTTTTCACCACCTTCACTGt > 2:47875/1‑251 (MQ=255) ggagggtcgTTTAAGACACGCCTTTTCGTGCCGGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCCGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGTCCAATCTCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGaa < 1:10003/240‑1 (MQ=255) | ATGATGAGGTCTACCACAATCCACTACATCCTTACACCAGGGCATTGATGTCGGCAGTCCCCATACCTGATCCGGATCTGGAGAAGAACAAAACCATCCAGTTACTGGAAGGGGAATTACCGTCGCCGATCAACCCGCCTTCCGGTTGTGTTTTCCGTACCC‑GTTGCCCGATTGCCGGTCCAGAGTGCGCCAAAACACGTCCTGTTCTGGAGGGGAGTTTCAGACACTCCGTTTCTTGCCTGAAAGTCGATCCGCTTTAAAAACAATAAGGGCTGACAGTTGTCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAA > NC_000913/1306509‑1306964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |