| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,301,992 | 0 | A | T | 81.8% | 44.2 / 2.6 | 22 | N271Y (AAT→TAT) | oppA | oligopeptide ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base A (2/2); new base T (10/8); total (12/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01 | |||||||||||
ATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAAT > NC_000913/1301773‑1302238 | aTCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGTAACAACGCGAAAACCGTTATTAAACAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAg < 1:244562/249‑1 (MQ=255) ccTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAACAAGAGATCACGGACGAAGTTCACGTTGATCTCTACCTGTGCACTTAc > 2:37630/1‑251 (MQ=255) tAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACg < 1:310195/249‑1 (MQ=255) gaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTc > 1:241505/1‑251 (MQ=255) aaaTCGTTCTTGAACGCAGCCCGCCCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTCCCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATCCCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTc < 1:111000/250‑1 (MQ=255) cGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAACCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCTATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTAcc < 1:37630/251‑1 (MQ=255) aaCCTACTGGAACACCGCTAAACCCGTTATTAACAAGGTAACCTTTTTGCCTATTGCTTCTGAAGTTACCGATTTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTACACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCg < 1:251564/250‑1 (MQ=255) gaaaaaacgctaaatccttgttaacccAGTTAACCTATTGGCCTATTGCTTTTGAATTTACCGATGTAAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACGGCATCCCGATCGAATTGTTCCAGAAGTGGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATTCCTGGTCACTTTCTATGCCGAATTTAACAACCAAAATCCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGaaa < 2:341236/226‑1 (MQ=255) aacaacGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACt > 1:282885/1‑251 (MQ=255) caacGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACt > 2:17617/1‑249 (MQ=255) aacccGTTATTAACCAGGTAACCTATTTGCCTATTTCTTCTGAATTTTCCTAGGTCATCC‑GCTACCGTAGTGGGGAAATTGACATGACGTAAAACCGCATGCCGATCGAATTGTTCCATAAGCTGAAAAAAGAGATCCCGGACGAAGTCCACGTTGATCCATCCCTTTGCACTTTCTATTACGAAATTACCATCCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGAc < 1:215528/248‑1 (MQ=255) tattaACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATAc < 1:8177/157‑1 (MQ=255) tattaACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATAc > 2:8177/1‑157 (MQ=255) accagttaccttATTTGACTATTGCTTCCGAAGTTACCGATGTCATCC‑TATACCGTAGTGGTAAAACTGACTTGACGTATAACAGCATGCTGATCGAATTGTCCCAGAATCATAAAAAAGAGATCCCGGACGAAGTCCACGTTGATCCATACCTGTGCCTTTACTATTACGAAATTAACACCCAAATACCGCCAGTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCAtt < 2:291749/240‑1 (MQ=255) ccAGATAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGT‑AACCATCTACCGTCGCGGTGAATTCTACATGAAGTATAACCGCATGCCGATCGCAATGTTCAAGAAGCTGAAAAAAGAGATCCCGGACGAAGGTAAAGTTGATCCATACCTGTGCACTTACTTTTACGAAATTAACAACAAGAAACCGCCATTAAACGATGTGCGAGGGCGTACCGAACTGAAACTAGGTAGGGACCGGGCTATCATTg > 2:55404/1‑251 (MQ=255) ttGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGACCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCAGGACGCAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAACCTAGGTATGGACCGCGATCTCCTTGTTAATAAAGTGAAAtcgc > 2:21209/1‑249 (MQ=255) tGAAGTTACCGATGTCAACC‑GCTACCGTCGAGGTGACATCGAACTGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAAc > 1:133599/1‑250 (MQ=255) ttACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGccc > 1:173241/1‑251 (MQ=255) gCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTAAGGTTACACt > 1:100653/1‑251 (MQ=255) gtgAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACt > 2:47854/1‑251 (MQ=255) aCATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGgcgc > 1:254468/1‑250 (MQ=255) aaCGAATAACACAAGGCCGAGAGAAATGTCCCAGAAGCTAAAAAAAGAGTACCCTGACGAAGTCCACGTTGATCAATACCGGTGCACTTACCTTTACAAAAGTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTAAGGTTACACTCCGCCGTATACTGATGGCGCAAAAt < 2:100653/250‑1 (MQ=255) | ATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCAACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACC‑GCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAAT > NC_000913/1301773‑1302238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |