| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,050,092 | C→T | S87L (TCA→TTA) L22L (CTC→CTT) |
insA4 → insB4 → |
IS1 family protein InsA IS1 family protein InsB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,050,092 | 0 | C | T | 90.0% | 23.8 / ‑6.4 | 21 | S87L (TCA→TTA) L22L (CTC→CTT) | insA4 insB4 | IS1 family protein InsA IS1 family protein InsB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/8); minor base A (2/0); total (12/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGC‑TGGGGCGTCTTATG > NC_000913/1049848‑1050287 | accAGCTGTCCCTCCTGTGCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCTCTGCCGGACATCAGCGCTATCCCTCCTCTCTCTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGCCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGcc < 1:7348/248‑1 (MQ=11) tcccctcctgtccccctgctgtgggggTGGTGCGGACCGGCAAAAGAACGGCCGGACATCAGCGCGATCTCTGCTCTCACTGCCGGAAAACATGGCAACTGCAGTTCACTTACTCCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCTCGCATTATTGGCGTTTGCCTCAACACGATCTGCCGCCATATAAAAAACTGAGGCCGCAGTCg < 2:30984/227‑1 (MQ=11) ctcctGTTCATCTACTAACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCAATGACGTAAAACATGGCAACTGCAGTTCGCTTACACCGCTTCTCAACCCGGTAAGCAACAGAAAATCATTGTTATGGCCATGAATGGCGGTGGATGCCGGGCAACAGCCCGCATAATGGGCGTTTGCCTCCACACGATTTTACGCAATTTAATAAACTAGGGCCGCAGTCggaaa > 2:301220/1‑247 (MQ=11) cGGGTTGGTGCGTAACGGCAAAAACGCTGCCGGACATCAGCGATATCTCTACTCTCACTGCCGTAAAACATGACCACTGCAGTTAACTTACACCGCTTCTCAACCCGGTACGCACCAGACAATCATTGCTATGGCAATGCACGGCGTTGGATTCCAGGAAACAGCACGCATTATGGGCGATGGACTCAACACGATTTTCCTACATTTAAACACCTTGGGCCGCAGTCGACAACCTCGCGCATTCAGCCg > 2:139085/1‑249 (MQ=2) aaGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTgcgc > 1:263844/1‑251 (MQ=14) cACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGACATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCgg > 1:336161/1‑250 (MQ=14) cGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGa < 1:71710/251‑1 (MQ=14) ggACATCCGCGATATCACTGCTCTAACTGCCGTAAAACATGGCAACTGCAGTTAACTTACACCGCTTCTCAACACGGTACGCACCAGAAAAACATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGACCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTAAGGCCGCAGTCGGTCACCGCGCGCATACAGCCGGGCAGTGACGTCATCGACTGCGCGGacgtggtc > 2:168604/1‑244 (MQ=11) tctcTGCTCTCACTGCCGTAAAACATGGCAACTGACGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGAt > 1:92483/1‑250 (MQ=14) gttcacctgctccGCTTCACAACCCGGTACTCCACAGAAAAGCAGTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTGCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGTATACAGCCGGGTAGTGACGTCAGCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGttttg < 2:28424/240‑2 (MQ=11) cTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGCAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGt > 1:236792/1‑251 (MQ=14) tACACCGCTTCTCAACCCGGTACGCACCAGAAACTCATTGATATGGCCATGACTGGCGTTGGAAGACGTGCAACAGCCCGCATTATGGGCGTTGGACTCAACACGATTTTCCGCCATTTAAAAACCTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCAGGGCAGTGCCGTCATCGTCTGCGCGGAAATGGACGCAAAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGtttttagcgaat > 2:19625/1‑243 (MQ=11) tcgcAACCCGGTACACACCAGAAAATCATGGATATGGTCATGAATGGCGTTGGATGCCGGGAAACAGCCCGGATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTCACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAAGGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGAGCTGGCTGTTATACGCGTATGACAGGCt < 2:2989/247‑1 (MQ=11) ccGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGa < 1:4989/251‑1 (MQ=14) cGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAc > 1:281525/1‑251 (MQ=14) aCGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGAGGCCGGGCAACAGCCCGAATTATGGGCGTTGGCCTCATCACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCGCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGTGGATACGTCGGGGCTAAATCGCGCCAGCTCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGgtt < 2:93927/251‑1 (MQ=11) ggCCATGAATGGCGTTGGATGCCGGGCAACAGCCCTCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAACCTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACg < 2:92483/251‑1 (MQ=14) ccATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAACAACTTAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGTAAATGTACGCACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGAATGACAGGCTCCGACAGACGGTTGTTGGCCACGTATTCGGTGAACGcg > 2:251113/1‑250 (MQ=11) aaTGTCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCAATTTAAAAAACTTAGGCCGCAGTCGGTAACCGCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCTAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGTTTGGTGCGCACGTATTCTGTGAACGCACTAtt < 1:257233/251‑2 (MQ=11) gCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTTAGGCCGCAGTCGGTAACCTCGCGCATACCGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGACGCAGGTTTGTGCGCACGTATTCGGGGAACGCACTATGGCCACGCATgggggtatt > 2:18605/1‑246 (MQ=11) aCAGCACGCAATATGGGCGTTGGCCTCAACACGATTTTACGCCATTTAAAAAACTTAGGCCGCAGACGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGAAACATCGGGGCTAAATCGCGGCAGAGCTGTCTGTTTTACGCGTATAACAGGCTCCGGAAGAATGTTGTTGCGACCGTATTCGGGTAACGCCATATGGCGACGA‑Tgggggccctttat > 2:62864/1‑242 (MQ=11) | ATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGC‑TGGGGCGTCTTATG > NC_000913/1049848‑1050287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |