| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 905,659 | C→T | F249F (TTC→TTT) | amiD → | N‑acetylmuramoyl‑L‑alanine amidase D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 905,659 | 0 | C | T | 95.7% | 60.3 / ‑3.5 | 23 | F249F (TTC→TTT) | amiD | N‑acetylmuramoyl‑L‑alanine amidase D |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (14/8); total (15/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.61e-01 | |||||||||||
CAGCGCAAAGACGATCCGGGGCCATTATTTCCCTGGCAGCAACTGGCGCAGCAGGGGATTGGTGCCTGGCCGGATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAA‑AGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGC > NC_000913/905426‑905902 | cAGCGCAAAGACGATCCGGGGCCATTATTTCCCTGGCAGCAACTGGCGCAGCAGGGGATTGGTGCCTGGCCGGATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTtatata > 1:203072/1‑250 (MQ=255) ggcgcAAAGACGATCCTGGGCCTTGATTTCCCTGGCAGCAACTGGCGCAGCAGGGGATGGGTGCCTGGCCGGATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGTTATATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACCCCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAAc < 2:270286/250‑1 (MQ=255) gcaACTGGCGCAGCAGGGGATTGGTGCCTGGCCGGATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCAGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAACCCTGATATGACACCGCGCGAGCAGCGGCGCGTGCTTATGGCATTCCAGATGCATTTTCGCCCGCCTTTATATAACGGCGAGGAGGATGCAGAACCTCAGGCGATTGCCgc > 2:108839/1‑248 (MQ=255) aaCTGGCGCAGCAGGGGATTGGTGCCTGGCCGGATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGc > 1:288344/1‑250 (MQ=255) ggATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGCCGTTATATAACGGCGAAGCGGATGCAGAAACTCAGCCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGcgcg > 1:38253/1‑251 (MQ=255) gATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGAAGAAACTAAGGCGATTGCCGCAGCATTACTGGAGAACTACGGGCAGGATTAGCGCgg > 1:337129/1‑251 (MQ=255) gggTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATCTGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATCTAACGGAGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCGTTGCTGGAGACATACGGGCAGGATTAGCCAGGCCGTTTTCCg > 2:106419/1‑251 (MQ=255) cTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGCAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGccc > 2:300493/1‑250 (MQ=255) ccGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAggcg > 1:33277/1‑251 (MQ=255) aGATACCGCGTCATTGCTGGAGCTTTTGGCGCGATACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGAAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTtcctccc > 1:61110/1‑250 (MQ=255) aCCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGt < 1:300493/251‑1 (MQ=255) ccgtgTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGCAGCATTGCTGGAGAAATACGGGAAGGATTAGCGCAGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGTTACCTTCaggtggga > 2:165350/5‑242 (MQ=255) ccgtgTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTc < 1:165350/237‑1 (MQ=255) cgTCATTGCTGGGGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATAGGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGtgatg < 2:203072/251‑1 (MQ=255) gTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGtgatga < 1:134012/251‑1 (MQ=255) tACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCGGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGATTTCTCGATACCTTCATCCAGGGCGATGACCGGCTGATAACCTAACTCTTCCTg > 1:129979/1‑251 (MQ=255) tGACGTTAAACCTGATATGACAACGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATAACGGCGAAGCGGATGCAGACACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCCGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACATAACTCTTCCTGCGCAcgcg > 2:133211/1‑251 (MQ=255) gactttaaacctaaattGACACCGCGCGAGCGGCGGTGCGGTATTAGTGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCAcgcg < 2:263407/234‑1 (MQ=255) cccgctggAGCGGCGGCGCGTGATTATGGCATTCCAGATGCATTCTCGCTCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCTATTGCCGAAGCATTGCTGGAGAAATACGGGCAGTATTAGCGCGGCAGTTTTCCGTTGTCGCGTAGCCAGGCGGCAGTTTTCGCGATACCTTCATCCAGTGTGATGATCGGCTGAGAACCTAACACTTCCTGCGCACGCGTAATATCCAGCGTAA‑AGTCaa < 1:159980/244‑1 (MQ=255) ggcgCGTGATTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAAAGGAGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGGCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCCTCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCTCACGCGTAATATCCAGAGTAA‑AGGCCAAATTCAACCTgg > 2:165416/1‑249 (MQ=255) aTTATGGCATTCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAA‑AGTCAAAATTCAACTTGGAGACGCCGtt > 1:118194/1‑250 (MQ=255) tATGGCATGCCAGATGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAA‑AGTCAAAATTCAACTTGGAGACGCCGTAg < 1:320964/250‑1 (MQ=255) tGCATTTTCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGGAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCGTCCAGGGTGAGGACAGACTGATAACTTAACTAATCCTGCCCACGCGTAATATACCGCGTAAGAG‑CAAAATTCAACTTTGATAAGCCGAAGTGGTTCAGAggcggc > 2:256237/1‑251 (MQ=255) | CAGCGCAAAGACGATCCGGGGCCATTATTTCCCTGGCAGCAACTGGCGCAGCAGGGGATTGGTGCCTGGCCGGATGCGCAGCGGGTTAACTTTTACCTTGCCGGGCGCGCGCCGCACACACCGGTAGATACCGCGTCATTGCTGGAGCTTTTGGCGCGCTACGGTTATGACGTTAAACCTGATATGACACCGCGCGAGCAGCGGCGCGTGATTATGGCATTCCAGATGCATTTCCGCCCGACGTTATATAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGAAGCATTGCTGGAGAAATACGGGCAGGATTAGCGCGGCAGTTTTCCGTGGTCGCGTAGCCAGGCGGCAGTTTTCTCGATACCTTCATCCAGGGTGATGACCGGCTGATAACCTAACTCTTCCTGCGCACGCGTAATATCCAGCGTAA‑AGTCAAAATTCAACTTGGAGACGCCGTAGTGGGTCAGCGGCGGC > NC_000913/905426‑905902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |