| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 659,527 | G→T | T230T (ACC→ACA) | lipA ← | lipoyl synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 659,527 | 0 | G | T | 97.1% | 94.5 / ‑5.8 | 35 | T230T (ACC→ACA) | lipA | lipoyl synthase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (18/16); total (18/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
AATCGGCGTGGTAAGAAGAGCGGACAAACGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAGACCAGACTTGGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGCGGGCTTTTTTCCCGAATGGCAGTAATGCAATCCGCAAAG > NC_000913/659280‑659773 | aaTCGGCGTGGTAAGAAGAGCGGACAAACGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGACGCGCATTACCTAAATAATTTCTTCCTTGGGTTCACCCAGTCCCACAATCAAACCAGACTTTGTc > 1:166770/1‑251 (MQ=255) cGGCGTGGTAAGAAGAGCGGACAAACGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCggg < 1:84538/251‑1 (MQ=255) ggTAAGAAGAGCGGACAAACGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTc < 1:286453/250‑1 (MQ=255) gaagaGCGGACAAACGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATg < 1:9493/251‑1 (MQ=255) aaaCGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTa > 1:58545/1‑250 (MQ=255) aaCGGACCGCATGCAGAATGGGTAAAGCCCATCACCAGCGCTTAGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAAACGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCACAGCGTTAACATCGTCACAACATGACGTCGCCGGACGCGCATTAACTCAATAATTTCTTCATTGGTTTCACACAGTACCACCAACAAACCAGAATTTGTAGGGATTGCCTGTTGCGcttcttaat > 2:345951/1‑247 (MQ=255) acgaactcaTGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCAGCCGTGCTAACGGAACGTGGAACCGGCAGGTGATGTCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCAGTTGTTTCACCCAGTCCCACCATCAAACCAGACGTTGTCGGGATGTCCGGATGCGCTTCTTTAAAGCGTTCca < 2:215993/243‑1 (MQ=255) ggcagcaTGGGTAAAGCCCAACGCAAGCGCTGCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCCCCCAGTCCCACCATCAAACCAGCCTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCcagca < 2:193500/250‑1 (MQ=255) gcaTGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCtt > 1:265045/1‑251 (MQ=255) caTGGGTTAAGCCCATCGCCAGTGCTTCGGCTTTCATTTCGCCGCTCTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGAGTGCGGATTGGCTGCAAATATTGCCCCAGCGTTAACATCGGCATCCCATGACGGCGCAGGTCGCGCATTACCTCAATTAGTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCTGGATTTCCGGATGCGCTTATTTAAAGCGTTCCAGCAGCTTc < 2:308117/251‑1 (MQ=255) caTGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCca > 1:215993/1‑243 (MQ=255) aGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAg < 1:333109/251‑1 (MQ=255) ttCGGCTTGCATTTCGTCGAACTCATCCGGGCTCACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTACCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTAGTTTAACCCAGTCCCACCCTCAAACCAGACTTTTTCGGGTTTTCCGGATGCGCTTCTTTAAAGCGGTCCAGCAGCTTCAGCAACCAGTTGTAATCTGCAcc > 2:349503/1‑249 (MQ=255) cGGCTTTCATTTCGTAGCACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGGTAACATCGTCACAACATGACGGCCCAAGTCCCGCATTACCTCAAAAATTTCTTCATTGGGTTCACCCAGGCCCCCCATCCAACCAGACTTTGTCGGGATTTCCGGCTGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCCGTTGTAATCTGCACCAGGc > 2:117497/1‑251 (MQ=255) cTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATCTTGCCCCAGCGTTAACATCGTCACAACATGACGGCGCAGGTCGCGCATTACCTCCATAATTTCTTCATTGGTTTCAACCAGACCCACCATCACACCAGACTTTTTCGGGTTTTACGGATGCGCTTCTTTAAAGCGTTCCAGAAGCTTCAGCGACCAGTTGTGATATGCACCAGGCCgg > 2:328567/1‑250 (MQ=255) tcgAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACggg > 1:112621/1‑249 (MQ=255) aTCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATAcgcg > 1:35353/1‑251 (MQ=255) ccGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCCTTACCTCAATATTTTCTTCATTGTTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTTAAGCGTTCCAGCAGATTCAGAGACCAGTTGTCATCTGCACCAGTCCGTACCTTGCGGTaacaacgcagt > 1:264581/1‑242 (MQ=255) gggCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGctt < 2:65658/175‑1 (MQ=255) gggCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGctt > 1:65658/1‑175 (MQ=255) taacgtaacgTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGttt > 1:164935/1‑251 (MQ=255) aCCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGtt > 1:223632/1‑251 (MQ=255) gCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTc < 1:211735/251‑1 (MQ=255) tGCCCCAGCGTTAAAATTGTCACACCATTGCGGCTCAGGTCGCGCATTACCTTAATAATTTCTTCATGGGTTTCCCCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTGAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCAACAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAatat < 2:265045/250‑1 (MQ=255) gTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACg < 1:73506/251‑1 (MQ=255) ccggcccctgtcgctcagtcccTCAATAATTTCTTCATTGGTTTCACCCAGTCCCCCCATCAAAGCAGACTGTTTCGGGATTTCCGGATGCGCTTCTTGAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACCCATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGaaag < 2:164935/231‑2 (MQ=255) gcAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGc < 1:86823/251‑1 (MQ=255) gcgcATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCagag < 1:345951/251‑1 (MQ=255) tcATTTGTTTCACCCAGTCCCACCATCAATCCAGACTTTGGCGGGATTTCCGGATTCCATTCTGTAAAGCGTTCAAGCAGCTGCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATGTGCggg < 2:234156/249‑1 (MQ=255) ggTTTCACCCAGTCCCACCAGCAAACCAGTCTTTGTCGGGATTTCCGGATGCGCTTCTTTATAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTTCCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGCTGGCGTTGCATGCAGAATATCCAGAGCTCG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGCGGTCtttttt < 2:223632/251‑1 (MQ=255) gTTTCACCCAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGAACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCCGAATATCCAGAG‑ACGGATCAATACGACCGCGGAAATCCGGCAACAGAGTTTCAATTTTACTTTGCGGGCTTTTTTc > 2:59809/1‑251 (MQ=255) cccAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGCGGGCTTTTTTCCCGAAt > 1:156712/1‑251 (MQ=255) cccAGTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAAAACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACAGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGAGGGCTTTTTTCCCGAAt > 1:172412/1‑251 (MQ=255) gTCCCACCATCAAACCAGACTTTGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGCGGGCTTTTTTCCCGAATGGc > 1:10740/1‑250 (MQ=255) acTTGGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGCGGGCTTTTTTCCCGAATGGCAGTAATGCAATCCGCAAAg < 1:63999/251‑1 (MQ=255) | AATCGGCGTGGTAAGAAGAGCGGACAAACGGACCGCATGCAGCATGGGTAAAGCCCATCGCCAGCGCTTCGGCTTTCATTTCGTCGAACTCATCCGGGCTAACGTAACGTTGAACCGGCAGGTGATGGCGGCTTGGCTGCAAATATTGCCCCAGCGTTAACATCGTCACACCATGACGGCGCAGGTCGCGCATTACCTCAATAATTTCTTCATTGGTTTCACCCAGTCCCACCATCAGACCAGACTTGGTCGGGATTTCCGGATGCGCTTCTTTAAAGCGTTCCAGCAGCTTCAGCGACCAGTTGTAATCTGCACCAGGCCGTACCTGACGGTAAATACGCGGTACGTTTTCCAGGTTATGGTTGAACACATCTGGTGGCGTTGCAGTCAGAATATCCAGAGCACG‑ATCCATACGACCGCGGAAATCCGGCACCAGAGTTTCAATTTTGATTTGCGGGCTTTTTTCCCGAATGGCAGTAATGCAATCCGCAAAG > NC_000913/659280‑659773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |