| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 554,493 | G→A | intergenic (‑56/‑118) | ppiB ← / → cysS | peptidyl‑prolyl cis‑trans isomerase B/cysteine‑‑tRNA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 554,493 | 0 | G | A | 86.4% | 47.4 / ‑1.8 | 22 | intergenic (‑56/‑118) | ppiB/cysS | peptidyl‑prolyl cis‑trans isomerase B/cysteine‑‑tRNA ligase |
| Reads supporting (aligned to +/- strand): ref base G (1/2); new base A (11/8); total (12/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCTGAATCATAAAGCCGTTGATAACACGGTGGAAAATGGTGTTGTTGTAAAAACCTTCGCGGCAGTAGTCCAGGAAGTTTTTAACTGTTTCAGGTGCTTTATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGGGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGTGTGTGGAATCACCGTTTACGATCTCTGTCATATCGGTCACGGG > NC_000913/554283‑554733 | cccTGAATCATAAAGCCGTTGATAACACGGTGGAAAATGGTGTTGTTGTAAAAACCTTCGCGGCAGTAGTCCAGGAAGTTTTTAACTGTTTCAGGTGCTTTATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGc > 1:338751/1‑250 (MQ=255) ccTGAATCAAAAAGCCGTTGATAACACGGTGGAAAATGGTGTTGTTGTAAAATCCTTCGCGGCAGTAGTCCAGGAAGTTTTTAACTGTTTCAGGTGCTTTATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGAGCATCACGCaa < 2:35368/251‑1 (MQ=255) agtaTAAAGCCGGTGATAACACGGTGGAAAATGGTTTTGTTGTAAAATCCTTCGCGGCAGTAGACCAGGAAGTGTTTAACTGTGGCTGGTGGTTTATGATCAAAAGTTTTGATGACCATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTATTCCGTTTGTTTGGTGCATCAACCCAGTACCGGTCATATAGAGGGGGGTTGTATCGCATAGCCGCACGATCGGATCCTCACGCAATGTAt < 2:21971/248‑1 (MQ=255) gCCGTTGATAACACGGTGGAAAATGGTGTTGTTGTAAAAACCTTCGCGGCAGTAGTCCAGGAAGTTTTTAACTGTTTCAGGTGCTTTATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTc < 1:220331/251‑1 (MQ=255) acGGTGGAAAATGGTGTTGTTGTAAAAACCTTCGCGGCCGTAGTCCAGGAAGTTTTTAACTGTTTCAGGTGCTTTATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGAGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGCTTGGTGCTTCAACCCAGTTCGGGTCATATATAGGGTGGTGTTATAGCATAACAGCACGATCGGATCCTCACGCAATGTTTGCTGTTTCGCGCGGGaagtt > 2:111117/1‑248 (MQ=255) tGTTTCAGGCGCTTTATCGTCAAAAGTTTTGATGAGAATATCGACGAGATTGGTGTGGAAAGAAACCATTTTTGCATCATGTTCCGTTTGATTGGTGCTTCAAACCAGTTCGGGTAATATATAGAGTGGTGTTATAGCATAACCGCACGGTCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACTCACACATGTCTAAACGGAAACTTCGATGCTaaa > 2:140858/1‑250 (MQ=255) tATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGGGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATActc < 1:111117/250‑1 (MQ=255) cAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTAAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGCTTCTAAAAATCTTCAATACTCTGACACg > 1:264231/1‑251 (MQ=255) gaCAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGaa < 1:39547/251‑1 (MQ=255) aaTATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAAttt < 1:21126/251‑1 (MQ=255) ccGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCt > 1:218765/1‑250 (MQ=255) gttggttttgAAAGTAAACATTTTTGCCTCCTGTGCCGTTTGAGTGGTTCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCTCGCGGGAAATATGGGTATTATTCGCAACGCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTTTGACACGCTAAAAAGAGGATTTTCAGCCTATTCAc < 2:227890/242‑1 (MQ=255) gtgGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCGAAAAGAGGAATTTAAGCCTATTCACGCCggg > 1:236114/1‑251 (MQ=255) aGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCTGGAAATAGGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTc < 1:140858/251‑1 (MQ=255) ttCCGTTTGATTGGCGCTTCAACACAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCCCGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATCTGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATATTCGATGCTAAAAATATTCATTACTCTGACACGCCAAAACGAGGAATTTAAGCCTATTAACGCCGGGGAAGTCGGCATGAACGTGTGGGGAATc > 2:4939/1‑251 (MQ=255) tCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATTGAGTGGTGTTATAGCATAACCGCCCGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACCTGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGCGTAATTTAAGCCTATTCACGCAGGGGAAGTCGGCATGTACGTGTGTGGAAta > 2:301255/1‑249 (MQ=255) gATTGGTGCTTCAACCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGAGTGTGGAATCACCGttt > 1:29257/1‑250 (MQ=255) agtGGTGCTTCTACCCAAGTCGTGACATATAAAGAGTTGGGTTATAGCATAACCGCACGAACGGATTATCACGCAATGTACTCTGATTCGCTCGGGAAATATGGGTATTATACGCAACTCAATTACCCGCACATGTCTAAACGGAATATTCGATTCTAAAAATCTTCAATACTCTGACACGCCAAAAATAGGATTTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGTGTGTGGAATCACCGTTTAc < 2:234395/249‑1 (MQ=255) aaCCCAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGTGTGTGGAATCACCGTTTACGATCTCTGTCa < 1:140216/251‑1 (MQ=255) cAGTTCGGGTCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGTGTGTGGAATCACCGTTTACGATCTCTGTCATATc > 1:313428/1‑251 (MQ=255) tCATATATAGAGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGTGTGTGGAATCACCGTTTACGATCTCTGTCATATCGGTCACggg > 1:162812/1‑251 (MQ=255) tCATATATAGAGTGGTGTTATAGCATAACCGCAAGATCGGCTCATCACGCAATGTATGCTGATTCGCGCGGGACATCTGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCAGGGGAAGTCGGCCTGTACGTGTGTGGAATCACCGTTTACGATCTCTGTCATATCGGTCACggg > 1:201973/1‑251 (MQ=255) | CCCTGAATCATAAAGCCGTTGATAACACGGTGGAAAATGGTGTTGTTGTAAAAACCTTCGCGGCAGTAGTCCAGGAAGTTTTTAACTGTTTCAGGTGCTTTATCGTCAAAAGTTTTGATGACAATATCGCCGTGATTGGTGTGGAAAGTAACCATTTTTGCATCCTGTTCCGTTTGATTGGTGCTTCAACCCAGTTCGGGTCATATATAGGGTGGTGTTATAGCATAACCGCACGATCGGATCATCACGCAATGTATGCTGATTCGCGCGGGAAATATGGGTATTATACGCAACTCAATTACCCACACATGTCTAAACGGAATCTTCGATGCTAAAAATCTTCAATACTCTGACACGCCAAAAAGAGGAATTTAAGCCTATTCACGCCGGGGAAGTCGGCATGTACGTGTGTGGAATCACCGTTTACGATCTCTGTCATATCGGTCACGGG > NC_000913/554283‑554733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |