| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,462,459 | G→A | Q68* (CAG→TAG) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,462,459 | 0 | G | A | 96.4% | 84.7 / NA | 28 | Q68* (CAG→TAG) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (13/14); minor base T (0/1); total (13/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CGTCACGCGGCAGCAGGTGCTGACGTGCATAGTGTTTAGCCACGATCCCGGCCAGCAGGTCGCGCTGGGTTGGAATCACCTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTGATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGTCTCGTTTCATCACATGCGGTGTCATGATCGCTCCATATTTTTAAGAACAGGTTATCCACAGA > NC_000913/4462213‑4462697 | cGTCACGCGGCAGCTGGGTCTGACGTGCATAGTGTTTAGCCACGATCCCGGCCAGCAGGTCGCGCTGGGTTGGAATCACCTTGCTGTCTTTGTTGGCGTGTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGTCATCAGCTTAttt < 1:38562/251‑1 (MQ=255) ggctgctggTGCTGAGGTGCATATTTTTTAGCCACGATCCCGGCCAGCAGGTCGCGCTGGGTTGGAATCACTTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTGTCAACTGc < 2:106023/244‑1 (MQ=255) gtcggACGTGCATAGTGTTTTGCCACGATCCCGGCTAGCAGGTCGAGCTGGGTTGGAATCACCTTGCTTTCTTTGTTGGCGGTTTCTTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGCCCACGGATCTCCTGGTTCAGTCGACCGCGTTTTTCCCGTTCAATGTCGCGAACGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAAGTTTCAACTGTGGTCTGGAt < 2:147527/247‑1 (MQ=255) gCATAGTGTTTAGCCACGAACCCGGCCAGCAGGTCGCGCTGGGTTGGAATCACCTTGATGCATATGCTGGCGCTTACGTTGAGTAACGAGGCGTTGGTCTGCACGCTCAGACCACGGATCTAGTGGTTCAGGCAACCGTGCTTTTAACGTTCAATGTCGCGAACGTCATGGTAATCGATGTAAGCACGATCCAGTTCCTTGT‑AGGGAAATGACCCCAGCTAATTTTCAACTGCGCCCGGGATCTCAtttct > 2:7288/1‑248 (MQ=255) gCCACGATCCCGGCCAGCAGGTCGCGCTGGGTTGGAATCACCTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGtt > 1:60974/1‑251 (MQ=255) gggTTGGAATCACCTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAAcc < 1:229658/251‑1 (MQ=255) gAATCACCTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTACTTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGAGGc > 2:155223/1‑250 (MQ=255) tCACCTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAAc > 1:3413/1‑250 (MQ=255) gttgGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGGCCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTGATTGATATCCACCTGGTTGCGGGCCGGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCgg < 1:16036/251‑1 (MQ=255) ttttCGTTGAGTCACGAGGCGTTGGTCTGCTCGACCAGACCTCGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTCGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCctcatc > 2:124467/1‑251 (MQ=255) cGTTGATTAACGAGGCTGTGGTCTGCTCTACCAGACCACTGATCTCCTGGTTCCGGCGACCGCGGTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGTACCTGACATCAGCTAATTTTCAACTGCGTTCTGGATCTCATTGATATCCACCTGGTTTCGGCCCTGCATCTGCTCGCTGACATCCGCGGCAACAGTGGCGCAATAATCGGCATCATCGAc < 1:218562/250‑1 (MQ=255) gTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCgct < 1:155223/251‑1 (MQ=255) gtccagtccaCGGAGTTCCGGGTTCAGGCGGACGCGTTTTTCACGTTAAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCg < 2:85900/249‑1 (MQ=255) gaccaCGGATCTCCTGGTTCAGGCGACCGCGATTTTCACGTTCAATGGCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACCTCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGCCAACCGCGGCAACAGTGGCGCAATAATCGGCTTCATCGAATTCCGCTGCTTTAGCTGCACGCAGAATCGcttct > 2:44738/1‑251 (MQ=255) gACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGc > 1:87920/1‑251 (MQ=255) tgtCACTTTCAATGTCGCTATCGTGACGGTACTCGATTTATGCACGAGCCAGTTGGTTGT‑ATTGATCTGACATCATCGAATTTTCAACTGCGTTCTGGAGCTCATTGTTATCCACCTGGTGGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTTCACGCAGAATCGCTTCTTTGATGCGCTCGTATTTAACCGTCTCTTTGCa < 2:349389/248‑1 (MQ=255) gTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGtct > 2:82605/1‑251 (MQ=255) aaaTGTCGCGACCGTGTCGGGCCTCTATGTAAGCACGTGCCA‑TTGTTTTTTATGGACCTGCAACCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTTCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCCCTTCTTTGATGCGCTCTGATTTAAACGGCTCTGTGCAGCCGTCTCg < 2:59252/249‑1 (MQ=255) gATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGTCTCGTTTCATcac > 1:264871/1‑250 (MQ=255) gTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCatcatc > 2:117765/1‑159 (MQ=255) gTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCatcatc < 1:117765/159‑1 (MQ=255) gACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGTCTCGTTTCATCACATGCGgt < 1:82605/251‑1 (MQ=255) ggTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGcatca < 2:144929/152‑1 (MQ=255) ggTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGcatca > 1:144929/1‑152 (MQ=255) aGTTGTTTGT‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTATGGATCTCATTGATATCCACCTGGTTGCTGCCCTGCATCTGCTCGCTGACAACCGCGTCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCCGCCGTCTCTTTTCATCACATGCGGTGTCATGATCGCTCCATATTTTTaca > 2:256256/1‑248 (MQ=255) gtttgt‑ATGGACCTGACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAAAAGTGGCGCAATAATCGGCATCATCAAATTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTATGTTTTAACCGGCACTGTGCAGCCGTCTCGTTTCATAACATGCGGTGTCATGATCGATCCATATTTTTAATAAc > 2:174416/1‑249 (MQ=255) tttgt‑ATGGGCCGGACAACAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGTCTCGTTTCATCACATGCGGTGTCATGATCGCTCCATATTTTTAAGAACAg < 2:60974/250‑1 (MQ=255) gACATCAGCTAATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGTCTCGTTTCATCACATGCGGTGTCATGATCGCTCCATATTTTTAAGAACAGGTTATCCACAGa < 1:67027/249‑1 (MQ=255) | CGTCACGCGGCAGCAGGTGCTGACGTGCATAGTGTTTAGCCACGATCCCGGCCAGCAGGTCGCGCTGGGTTGGAATCACCTTGCTGTCTTTGTTGGCGTTTTCGTTGAGTAACGAGGCGTTGGTCTGCTCGACCAGACCACGGATCTCCTGGTTCAGGCGACCGCGTTTTTCACGTTCAATGTCGCGATCGTGACGGTACTCGATGTAAGCACGAGCCAGTTGTTTGT‑ATGGACCTGACATCAGCTGATTTTCAACTGCGGTCTGGATCTCATTGATATCCACCTGGTTGCGGCCCTGCATCTGCTCGCTGACAACCGCGGCAACAGTGGCGCAATAATCGGCATCATCGACTTCCGCTGCTTTAGCTGCACGCAGAATCGCTTCTTTGATGCGCTCTGATTTAAACGGCACTTTGCAGCCGTCTCGTTTCATCACATGCGGTGTCATGATCGCTCCATATTTTTAAGAACAGGTTATCCACAGA > NC_000913/4462213‑4462697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |