| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,402,046 | G→A | W3* (TGG→TGA) | hflK → | regulator of FtsH protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,402,046 | 0 | G | A | 93.5% | 85.0 / ‑3.5 | 32 | W3* (TGG→TGA) | hflK | regulator of FtsH protease |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (14/15); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 | |||||||||||
GGCGTCTGAGAAGTCGTTTTTATCAGCTTCAGGCAATAGAAAAAGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGGAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGTTCATCGCAAGGCCCGCGCCCGCAGCTTGG > NC_000913/4401801‑4402267 | ggCGTCTGAGAAGTCGTTTTTATCAGCTTCAGGCAATAGAAAAAGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATc > 1:145200/1‑250 (MQ=255) agaAGTCGTTTTTATCAGCTTCAGGCAATAGAAAAAGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAAGCAGCCCGGta < 1:83838/251‑1 (MQ=255) gaAGTCGTTTTTATCAGCTTCAGGCAATAGAAAAAGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGAAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGCCGAAAGACAACAGGGAACACCGCATAACAAATATGGAGCACAAACATGGCGTGGAAACAACCCggca > 2:126606/1‑248 (MQ=255) atcagtgtCAGGCATTATAAAAAGAGTGGATGGAGGAGGCCCTCAGATTAAATCTGCAAGTGCGTGGGCCGATCGTTGATTGGCGTCGCCTCTTTACACAAGAACCTGCGTTGATCGACTACCTGTACTAACTGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGTCGTCGAAAGACAACAGTGATCACAGCATCACAAATGTGGAGTACAACCATGGCGTTAACTCAGCCCgttcatagctgacacga < 2:288286/244‑17 (MQ=255) ttCAGGCAATAGAAAAAGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACcgcg > 1:29922/1‑250 (MQ=255) actaaaaaacaagTGTATGGAGGAGGACGGCAGCGTAAGTCTGCAAGATCGTATGCCGATCGGTGACTGGCGGCGCCTCTGTAAAAAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTATCGTCTGAAGCGTGGAGTACTATCCTCTGGCGGCGAAAGACAACAGGGATCACCGCATAACAAATATGGCGCAAAAACATGGAGGGAAAACAGCCCGGTACTAACAGGCAAGaacgaaacacgtgg > 2:185193/12‑238 (MQ=255) aaaaGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAagc > 1:233054/1‑251 (MQ=255) agagTGGATGGAGGAGGACGGTAGCGTAATTCTTCAAGTTCGTAGGCTGTTCGTTGTCTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTTCCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGAGACCCGTGGGGAagcagc < 2:204820/251‑1 (MQ=255) atgcaggaggaCTTCAGCGTAAGTCTGAAAGTTCGTATGCCGATCGTTGACATGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGAAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATACGGCGGACAAACATGGAGTGAAATCAGCGCGGTAATAACGAACAAGACCGAGACCCGTGGGGATGCAGCAAACCt > 2:10448/5‑250 (MQ=255) ggaggaCGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTggcggc < 2:306291/251‑1 (MQ=255) gTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCGGTAAACAAGAACCGGCGTGGATCGATTACCTGATCTAACGGCGTCGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCATCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATgg < 2:282610/251‑1 (MQ=255) acGTATGCCGATCGGTGACTGGGGTCGGCTCGTTAAACAAGAACCGGCGTTGATCTATTACCTGATCTAACGGAGTAGCGTCTGAAGCGTGGAGTCATATCCTCGGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGGGAAATCAGCACGGTAATAACGGACAAGAGCGCGACCCGGGGGGAAGCAGCAAACCTGGCGCTAACTCTGAGGGAAATGGAAACAAAgg < 2:50437/249‑1 (MQ=255) gCCGATCGTGGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTTATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGTCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTcg < 1:309235/250‑1 (MQ=255) gATCGTTGACTGGCGTCGTCGCTGTAAACAAGAACCGGCGTTGATCGCTTACCTGATCTAACGGCGGAGCGTCTGAAGCGTGGAGTCATATCCGCGGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGCCGCGAt < 2:131079/251‑1 (MQ=255) cGCCTCTGTAAACAAGAACCGGCGTTGATCGCTTACCTGATCTAACGGCGTAGAGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCAAAAGACAACAAGAATCACCGCATACCAAATATGGAGCACAAACATGGAGTGAAATCAGCCCGGTAATCACGGACCAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGAGCCACATGAtt > 1:316502/1‑251 (MQ=255) tGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAga‑tg > 1:201189/1‑251 (MQ=255) gTAAACAAGAACCGGCGTTGAACGATTTCCTGATCGAACGGCGTATCGGCTGAAGCGTGGAGTCATATGCGCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAga < 2:326012/248‑1 (MQ=255) ggCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGGAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGt < 1:50223/209‑1 (MQ=255) cGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGCCATATCCTCTGGCGACGAAAGACAACAGGGATCACAGAATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGACGCAGAAAACCTGGAGGCACCTCTGAGGGAAATGGAAACAAAGGCGGTCACGATCAAGGGCCACCTGATTT‑GAGTGATCTCTTCCCCAAACt > 2:224959/1‑251 (MQ=255) gttgatcgcgctccgtaccTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCGGGCGTCGAAAGACAACAGGGAGCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGACGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAAcgg < 2:95558/233‑3 (MQ=255) gaacGATTTCCTGATCTAACGGCGTTGCGTCTGAAGCGTGGAGTCATATCCGCTGGCGTCGAAAGTCAACAGGGATCACCGCAGAACAAATATGGAGCACAAACATGGCGGGAAATCAGCCCGGGAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCCGGCGGCACCTTTGAGGGAAATTGAAACAAAGGCGGTCGCTATCCAGGGCCACCTGATTTAGA‑TGATATCTTCAGCaatcctagc < 2:125473/248‑8 (MQ=255) gCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCTGTAAAGGCACCGGATCTGGCGGTGGCAGtt < 1:99591/251‑1 (MQ=255) acaacaGGGATCACCGCCTAACCAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCCGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGAGGTCGCGATCAAGGGCCa > 2:49986/1‑153 (MQ=255) acaacaGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCa < 1:49986/153‑1 (MQ=255) acaGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGTTCATCGCAAGgccc < 1:126606/251‑1 (MQ=255) caGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTc > 2:161788/1‑170 (MQ=255) caGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTc < 1:161788/170‑1 (MQ=255) caGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCCCCGGATCTGGCGGTGGCCGGTCATCGCCAGgcccg > 1:230815/1‑251 (MQ=255) cACCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGGTCATCGCAAGgcccgcgcccgc > 1:59076/1‑251 (MQ=255) aCCGCATAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGTTCATCGCAAGgcccgcccccgcc > 1:250330/1‑250 (MQ=255) aTAACAAATATGGAGCACAAACATGGCGTGAAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGTTCATCGGAAGGGCCGCGCCCGCAGcctg > 1:121970/1‑248 (MQ=255) tAACAACTATGGAGCACAAACATGGCGTGCAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTATGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGGTCCTCGCGAGCGCCGCGGCCGCaaggtgg > 2:129598/1‑245 (MQ=255) | GGCGTCTGAGAAGTCGTTTTTATCAGCTTCAGGCAATAGAAAAAGAGTGGATGGAGGAGGACGGCAGCGTAAGTCTGCAAGTTCGTATGCCGATCGTTGACTGGCGTCGCCTCTGTAAACAAGAACCGGCGTTGATCGATTACCTGATCTAACGGCGTAGCGTCTGAAGCGTGGAGTCATATCCTCTGGCGTCGAAAGACAACAGGGATCACCGCATAACAAATATGGAGCACAAACATGGCGTGGAATCAGCCCGGTAATAACGGACAAGACCGCGACCCGTGGGGAAGCAGCAAACCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTTAGA‑TGATATCTTCCGCAAACTGAGCAAAAAGCTCGGTGGTCTGGGCGGCGGTAAAGGCACCGGATCTGGCGGTGGCAGTTCATCGCAAGGCCCGCGCCCGCAGCTTGG > NC_000913/4401801‑4402267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |