| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,325,644 | 0 | C | T | 97.2% | 108.2 / NA | 36 | S33N (AGC→AAC) | yjdN | PF06983 family protein YjdN |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (19/16); minor base A (1/0); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
GCCATTTCGATTTTTCCGTTAGCGGCAAGATTGTCAAACCAGCGTTTTCCTTCTTCGACCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGCTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGG > NC_000913/4325398‑4325889 | gCCATTTCGATTTTTCCGTTAGCGGCAAGATTGTCAAACCAGCGTTTTCCTTCTTCGACCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGCAATTGCATTCCGGAAGGGCCGTTCTCGGCGCTGTCCTGCGCTGATTATGGCATTTCGCCGTAGTTG‑At > 2:151161/1‑251 (MQ=255) gTTAGCGGCAAGATTGGCAAACCAGCGTTTTCCTTCTTCGACCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCcg < 1:208107/251‑1 (MQ=255) cgagatttCATTCTTCGAACTGCTGCGAATCGAGCACACGCGTAACGCCGGCGTAGCTGGCTTTTCCTGACGGCATGGAATCGCTCATCATGCTGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCAGTGGAGGCATCGGGAAATTGCATTACGGTAGGGAAGTTCTCGGCGCTGACCTGCAATGTTTTTGGCATTTAGGAGAA‑ATGTGTTTTATAGTGCTGTTCCGCGCCCTACGTACGCTGacaaagg > 2:163966/6‑245 (MQ=255) cGTTTTCCTTCTTCGACCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGAGTGGGCGATGGAGGTATAGGGTAATTGCATTCCGGAAGGGAAGTTCTAGGCGCTGTACTGAGATGATTTTGGCATTTCGCCGGAGTTG‑ATTTTATAGAGGAGTTCCGCGCCCAACGTACGGTGataagtggc > 2:314492/1‑246 (MQ=255) ccTTCTTCGACCTGTTGCGAATCGAGCTCCAGCGTAAAGCCGGAGTAGCTGGGTTTTCCTTACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCCCATTGGCGCGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGGTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATcg < 1:312319/250‑1 (MQ=255) ttcGACCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCgg > 1:137844/1‑251 (MQ=255) aCCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACa < 1:24071/251‑1 (MQ=255) gCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTAcc < 1:151161/250‑1 (MQ=255) gCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTAcc < 1:295736/250‑1 (MQ=255) gAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCaaa > 1:79774/1‑249 (MQ=255) ccAGCGGAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCGTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑gg < 2:331966/251‑1 (MQ=255) tAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGGAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGGAGTTG‑CTTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAgggg > 2:15956/1‑250 (MQ=255) caaGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAaggga‑gggagggcc > 2:65009/2‑249 (MQ=255) tGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAAc < 1:257465/242‑1 (MQ=255) tGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGAGGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTAGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTACGCGCCCAACGTACGTTTGTAATAGGCAATCGCGTCGGCACAGTTACCGGCAAAAGGGA‑GGGAGGGACTTAAc > 2:257465/1‑242 (MQ=255) gACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAACGAGA‑GGTAGGGACTTAACGGCATGAGGGTGACCTCAGt > 2:271536/1‑251 (MQ=255) ggcagCGCTCATCATGATGTCGCTTCCGGCAATGCGCGCAATGGCGTGGGCGATGGTGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGTGCTGTCCGGCGCTGAGTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑TGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGaa < 1:26487/251‑1 (MQ=255) atCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGGAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCACCGTACGTTGATAATAGGCAATCGCGTCGGACCAGTTACCGGCAAA‑GAGAAGGTAGGGACTTAAAGGCATGAAGGTGACCCCGGTTAAGAGaaacc > 2:133761/1‑248 (MQ=255) atCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGcc > 1:264501/1‑251 (MQ=255) gCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGGGACCTCAGTTAAGAGAAGCCAGt > 1:108859/1‑251 (MQ=255) tCCGTCAATGCGCACATAGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGTCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTctg < 2:112487/164‑3 (MQ=255) tCCGGCAATGCTCTCATGTGCGTGGGCGATGGCTGTATCGGGAAATTGCATTCCGGAAGTGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGTGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAAt < 2:349463/250‑1 (MQ=255) tCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATATTGGGATTTCGCCGAAGTTG‑AATTTATAGAGCAGTTCCGCGCCCACCGGACGTTGATAATAGGCAATCGCGTCgg > 1:112487/1‑164 (MQ=255) aaTGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATTGTGACCTCAGTTACGAGAAGCCAGTTAAGGGTAGGTCGAAATTTATAc > 1:279428/1‑250 (MQ=255) gcgcACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGa < 1:15956/250‑1 (MQ=255) tGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCTCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTg > 1:198710/1‑251 (MQ=255) gATGGCGGTATCGGGGAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAAAGGCat > 2:282827/1‑177 (MQ=255) gATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCat < 1:282827/177‑1 (MQ=255) tGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATc < 1:304997/250‑1 (MQ=255) tctcGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGc < 2:119442/112‑1 (MQ=255) tctcGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGc > 1:119442/1‑112 (MQ=255) gcgcTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAAAGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGGCGGCACTGTTGCCGGATg < 2:297361/251‑1 (MQ=255) tGCGCTGATTTTGGCATTTCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGAGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAAATTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggagaaa > 1:45378/1‑245 (MQ=255) ttCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc > 1:52827/1‑251 (MQ=255) tCGCCGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTAGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc < 1:176154/250‑1 (MQ=255) cGAAGTTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg > 1:110877/1‑251 (MQ=255) | GCCATTTCGATTTTTCCGTTAGCGGCAAGATTGTCAAACCAGCGTTTTCCTTCTTCGACCTGTTGCGAATCGAGCACCAGCGTAAAGCCGGAGTAGCTGGCTTTTCCTGACGGCATGGCATCGCTCATCATGATGTCGCTTCCGGCAATGCGCACATTGGCGTGGGCGATGGCGGTATCGGGAAATTGCATTCCGGAAGGGCAGTTCTCGGCGCTGTCCTGCGCTGATTTTGGCATTTCGCCGAAGCTG‑ATTTTATAGAGCAGTTCCGCGCCCAACGTACGTTGATAATAGGCAATCGCGTCGGAACAGTTACCGGCAAAAGAGA‑GGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGG > NC_000913/4325398‑4325889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |