| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,202,259 | G→A | G112R (GGG→AGG) | zraS → | sensor histidine kinase ZraS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,202,259 | 0 | G | A | 97.4% | 110.2 / ‑3.9 | 38 | G112R (GGG→AGG) | zraS | sensor histidine kinase ZraS |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (18/19); total (19/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
CTGTGATTCGTGATTATGGGCGGGCAAGCGAGGCAGACCGCCAGGCATTACTGGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCGGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGTAGATGCACAACAGGCTATTTTTATCGCCGTTGATGCCAGTGATCTGGTTGCAAC > NC_000913/4202023‑4202503 | gtgtgATTCGGGATTATGGGCGGGCAAGCGATGCAGACCGCCAGTCATTACTGGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGGCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATTTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTAt < 2:57207/250‑1 (MQ=255) tCGTGATTATGGGCGGGCAAGCGAGGCAGACCGCCAGGCATTACTGGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCg < 1:731/250‑1 (MQ=255) ggATTATGGGCGGGCAAGCGAGGCAGACCGCCAGGCATTACTGGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATg < 1:162915/250‑1 (MQ=255) aTGGGCGGGAAAACGCGGCAGAACGTCAGGACTTACTGGAAAAAGGTAATGGGCGTATCCGCGCTCTGGAGTCGGGAAGCCGCGTGTGGATGGGGATGCGGATGCCCCATGTACAGCCACAGGCGCTTCTGGGAGAGATGAGGGGACCACCGGCAGTGTATTAGTTCTCAAACCACGATGCGCAGGGTCTCGTTATTCTTCATAACGGCCACGATTAAGTCAAGCGTGCGCTCTCTTGGCCGGATgcactc > 2:116/1‑246 (MQ=255) gcAAGCGAGGCAGACCGCCAGGCATTACTGGAAAAAGGTAATGTGCTTAGCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCATAAAtt < 1:270953/251‑1 (MQ=255) aCCGCCAGTCATTACTGGAATAAGGTAATGTGCCTAGCCGCGCTCTGGAGTCGGGAAGCCGCGGAGGGATGGGGATGCGAATGCAACAGGTATAGCAACAGGCGCTTCTGGAGGAGATGGCGGGACAGCCGGGAGTGGTTTTGTTCGCAGTCACCGATGCGGAGGGCAGCATTATTCTTCATAGCGACCCCGATAAGTTCAGGCGTGCGCTCTATTCGTCGGATGAAATGCAGAAATTAAAGCCAGAGGaa < 1:222226/251‑1 (MQ=255) tACTTGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGTCGGTAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCgg < 2:345502/210‑1 (MQ=255) tACTGGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCgg > 1:345502/1‑210 (MQ=255) acgtgAAAAATGTAATGCGCTTATCCGTGCTCTGGAGTCGGGTAGCCGGGGAGGGATGGGGATGCGAATGCACCATGTTCAGTAACAGGCGCTTCTGGAAGAGATGGCGGGAAAGCCGGTAGTGTTGTGGTTCGCAGTCTCCGATGCGCAGGGCATCATTATTCTTCATAGCTACCCCGATAATGTCAGGCGTGCGCTCTATTCTCCGGATGAAATGCATAAATTAAAGCCAGATCAAAACTACCGCTggc < 2:80726/247‑1 (MQ=255) tgCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATACGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGACAACTACCGCTGGCGGCTGCTTGGAAAAACg > 1:218605/1‑251 (MQ=255) tgCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACg > 1:289922/1‑251 (MQ=255) aaGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTgg > 1:347462/1‑208 (MQ=255) aaGCCGCGTAGGGAGGGGGATGCGAATGCACCATGTACAGAAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGGTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAATACTCCCGCTgg < 2:347462/208‑1 (MQ=255) gCGAATGTACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATg < 2:83543/250‑1 (MQ=255) cATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCGGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTg > 1:126574/1‑251 (MQ=255) aCAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGa > 1:56702/1‑250 (MQ=255) tcttgAAGAGATGGCTGGACATGCGGGAGTGTTGGGTTTCGATGTCGCCGATGAGCAGGGAATTAGTATTCTTCATAGCTACCCCGATAAGGTAAGGCGTTGGCTCTAATTGCCGGAGGAAATGACGAAAGTAAAGACAGTGGAAAACGCCCGCTGGCTGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCGATTGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGTAGGGAATGCACAat < 2:296576/246‑1 (MQ=255) tCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCACAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAATCTCCCGCTTGCGGCTTCGTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGACAATGTCAGCGCCCTGGCGGCATGGAATGCACaa < 1:329700/249‑1 (MQ=255) ggAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAata < 1:59571/248‑1 (MQ=255) ggCGGGACATCCGGGTGTGTTGTGGTTCGTAGTCACCGATGCGCAGGGCATCATTATGCTTCATAGCGACCCCTATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGTCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCATCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTa < 2:43657/251‑1 (MQ=255) cGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCt > 1:130300/1‑251 (MQ=255) gggAGAGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCtg > 1:69594/1‑251 (MQ=255) ggAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCtgt > 1:7647/1‑251 (MQ=255) gggTTCGCAGTCACCGATGCGCAGGGCATCATTATTTTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGt < 2:130300/250‑1 (MQ=255) aCCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATc < 1:191801/157‑1 (MQ=255) aCCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATc > 2:191801/1‑157 (MQ=255) aCCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCa > 1:62612/1‑167 (MQ=255) aCCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCa < 2:62612/167‑1 (MQ=255) aTGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGTAGATGCACAACAGGCt > 1:253259/1‑251 (MQ=255) aTGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAAGTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTGTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGTAGATGCACAACAGGCt < 1:116/251‑1 (MQ=255) catcatTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAata < 1:152756/191‑1 (MQ=255) catcatTATTCTTCATAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGTAGATGCACAACAGGCTATTTTTATCg > 1:319448/1‑251 (MQ=255) catcatTATTCTTCATAGCGAACCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAata > 2:152756/1‑191 (MQ=255) tAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGcaca > 2:107920/1‑173 (MQ=255) tAGCGACCCCGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGcaca < 1:107920/173‑1 (MQ=255) ccGATAAGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCCTGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTACCACAAGTAGATGCACAACAGGCTATTTTTATCGCCGTTGATGCCAGttctttgttt > 2:274349/1‑242 (MQ=255) aaGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACACGTAGATGCACAACAGGCTATTTTTATCGCCGTTGATGCCAGTGATCTGGTTGCAAc > 1:212053/1‑251 (MQ=255) aaGGTCAGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGTAGATGCACAACAGGCTATTTTTATCGCCGTTGATGCCAGTGATCTGGTTGCAAc > 1:249261/1‑251 (MQ=255) | CTGTGATTCGTGATTATGGGCGGGCAAGCGAGGCAGACCGCCAGGCATTACTGGAAAAAGGTAATGTGCTTATCCGCGCTCTGGAGTCGGGAAGCCGCGTAGGGATGGGGATGCGAATGCACCATGTACAGCAACAGGCGCTTCTGGAAGAGATGGCGGGACAGCCGGGAGTGTTGTGGTTCGCAGTCACCGATGCGCAGGGCATCATTATTCTTCATAGCGACCCCGATAAGGTCGGGCGTGCGCTCTATTCGCCGGATGAAATGCAGAAATTAAAGCCAGAGGAAAACTCCCGCTGGCGGCTGCTTGGGAAAACGGAAACTACGCCTGCACTTGAGGTCTATCGTTTGTTCCAGCCAATGTCAGCGCCCTGGCGGCATGGAATGCACAATATGCCGCGCTGTAACGGCAAAGCTGTGCCACAAGTAGATGCACAACAGGCTATTTTTATCGCCGTTGATGCCAGTGATCTGGTTGCAAC > NC_000913/4202023‑4202503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |