| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,193,996 | 0 | T | G | 93.5% | 93.9 / ‑3.4 | 33 | D70A (GAT→GCT) | thiE | thiamine phosphate synthase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base G (18/11); minor base A (2/0); total (21/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTGTTCCAGCCCCTGCGGTGCAGAAGGCATCTGTTTGGTTTGCGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAATCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCACGCTTCCTCCTTACGCAGGTAGATTTCT > NC_000913/4193760‑4194234 | gCTGTTCCAGCCCCTGCGGTGCAGAAGGCATCTGTTTGGTTTGCGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAAt > 1:177113/1‑251 (MQ=255) ccccTGCGGTGCAGAAGGCATCTGTTTGGTTTGCGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTtat < 1:62833/251‑1 (MQ=255) gCAGAAGGCATCTGTTTGGTTTGCGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGcc > 1:123785/1‑251 (MQ=255) agcaGGCATCTGTTTGGTTTGCGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACATCGGTTTCCGTATCGTCATGTGTCGAAACGCCCAGCCGCGGGCCGGCCGCGCGGATGGCATTGCGATCGGCGGCTTGCACATCTTCCTGCCCCACATGGACGCCCGACGCCTGATGCTTGATCGCCAGCCACCTGCAAGCGGTGAGAAACAATCGCGCGGTAGAgcgccgtcca > 2:5699/4‑243 (MQ=255) gcaGGCATCTGTTTGGATTGCGTCGGGAACACATGTCCCAGCGAGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCCTGTGACGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCCTTGAGATCGGTGGCTTGCAACTCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCACGCCGCCCGTAAACGTTGATAAACAATCCCACGTTATAacggagcacc > 2:247937/3‑243 (MQ=255) cGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACAt < 1:313845/251‑1 (MQ=255) gAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCtt > 1:173777/1‑251 (MQ=255) gAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCtt > 1:174282/1‑251 (MQ=255) tgcCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCtt > 1:164351/1‑215 (MQ=255) gcCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCTGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAATCGTTGATAAACAATCGCGCGTTATAGCCGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTg > 1:126657/1‑251 (MQ=255) cgcgACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGACGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCCTACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCAACTCTTc > 1:115390/1‑219 (MQ=255) cATATCGTCATGTGTCGAAACGCCCAGCCGCATGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCCAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGCTACACAATcgcgcg > 2:125397/1‑151 (MQ=255) cATATCGTAATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATcgcgcg < 1:125397/151‑1 (MQ=255) atatCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATc > 1:263292/1‑251 (MQ=255) cGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCg > 1:186959/1‑250 (MQ=255) gAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAgcggcg > 1:218573/1‑146 (MQ=255) cAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGt > 1:157598/1‑250 (MQ=255) aGCCGCAGGCCTGCCGCGCGGCTGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCAGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCCTCATCGCGCCGATCTTTTATTGGTAGATGGAGAGTACGGACGCCTGCATCCAACAggcggtccataccatgtcc > 2:288956/1‑233 (MQ=255) gCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTcca < 1:91089/251‑1 (MQ=255) ccGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTACACCTCTTCATCGCGCCGATCTTTGATGCGTCACTGGTGAGGACGGACGCCTGCATCCAACAGACGTTCGATACCCAGTAAGCTGTcccccccc > 2:263134/1‑245 (MQ=255) gCTTGCAAATCTTCCCGCCCCAAATGGACGCCATACGCCTGATGATATATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTAc < 1:1910/251‑1 (MQ=255) aaccTTCCTGCCCCAAATGGACGCCATACGCCGTCTCCTGGAACGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAggagga < 1:167895/248‑1 (MQ=255) ccccAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACAACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCt > 1:123713/1‑251 (MQ=255) cccaaagggaccacactcGCCTGATGCTTGATCGCCAGCCGCCAGTAACCGTTGATAAACAACCGCGCGTTATAGCGGCGGCCCGGCGCAATTGCCGCCACGACATCGGCTTCCCCCGCTTCAGCGCTCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTg < 2:44861/234‑1 (MQ=255) ccAAATGGCCGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGACGCCAAGACATCGGCTTCCACCTCTTCATcgc > 2:205210/1‑126 (MQ=255) ccAAATGGACGCCAGACGCCTTATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATATCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATcgc < 1:205210/126‑1 (MQ=255) aTACGCTTGATGCTTGATGCCCAGCTGCCAGTAAGCGTTGATAAACAATGGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCGCTTCATCGCGCCGATCTTTGATGCGGAGCTGGAGAGTACGTACGCCTGCAGCCAACAGGCGTTCGATCCACGGTACGCTGTCCACCTCCGGTTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCACGCTtc < 1:18576/251‑1 (MQ=255) ccgctagatgttggagagCCACCCGCCAGTAAGCGGGGAGAAACAATCGCGCGTTATAGCGGGGGCCAGGCGCAATTGCCGCCACGACTGCGGCTTCCACCTCTTCATCGCGCCGATCGTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGTTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCACGCTtcct < 2:318872/234‑1 (MQ=255) aCGCCTGATGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCAc > 1:9072/1‑244 (MQ=255) aTGCTTGATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTGCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCACGCTTCCTCCTTACg < 1:155220/251‑1 (MQ=255) gATCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCACGCTTCCTCCTTACGCAGGTa < 1:290543/251‑1 (MQ=255) aTCGCCAGCCGCCAGTAAGCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCCATTGCCGCCACGACATCGGCTTACACCTCTTCATCGCGCCGACCTTTGATGCGTAGCTGGAGCGTACGGAAGCCTGCATCCCACAGACGTTAGATCCACTTTACGCTGTCCCACACCGGGTACAGTCCTGAACGAAACAGG‑ACAGGAGGAAAATACAG‑CTGCAACATCACGCTTCATCCTTACgacggg > 2:230155/1‑244 (MQ=255) aGCCGCCAGAAAACGTTGAAAAACAATCGCGCGGTATAGCGCCGGCCCAGCGCACTTGCCGCCACGACCTCGGCTTACACCTCTGCATCGCCCCGATCTTTGATGCACAGCTGGAGGGTACGTACGCCTGCATCCAACAGACGTTCGATCCCATGTACGATGTCCACCACCGGGTACAGGCCTAAACGACA‑AAGTCCAGGAGGAAAAT‑CAGGCTGGTCCTGCACGCTTCCCCCTTCAGCAGTTAGATTtct > 2:249897/1‑251 (MQ=255) | GCTGTTCCAGCCCCTGCGGTGCAGAAGGCATCTGTTTGGTTTGCGTCGGGAACACATGTCCCAGCGCGATATAAGAGGGGCGTGCTGCCAGCGCGACGTCGATTTCCATATCGTCATGTGTCGAAACGCCCAGCCGCAGGCCTGCCGCGCGGATGGCATTGAGATCGGTGGCTTGCAAATCTTCCTGCCCCAAATGGACGCCATACGCCTGATGCTTGATCGCCAGCCGCCAGTAATCGTTGATAAACAATCGCGCGTTATAGCGGCGGCCCAGCGCAATTGCCGCCACGACATCGGCTTCCACCTCTTCATCGCGCCGATCTTTGATGCGTAGCTGGAGAGTACGTACGCCTGCATCCAACAGACGTTCGATCCACTGTACGCTGTCCACCACCGGGTACAGTCCTGAACGAAA‑AGGTACAGGAGGAAAAT‑CAGGCTGATACATCACGCTTCCTCCTTACGCAGGTAGATTTCT > NC_000913/4193760‑4194234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |