| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,105,809 | G→A | intergenic (‑139/‑11) | cpxR ← / → cpxP | DNA‑binding transcriptional dual regulator CpxR/periplasmic protein CpxP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,105,809 | 0 | G | A | 95.5% | 68.4 / ‑3.5 | 23 | intergenic (‑139/‑11) | cpxR/cpxP | DNA‑binding transcriptional dual regulator CpxR/periplasmic protein CpxP |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (9/12); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01 | |||||||||||
GTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTGGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTT > NC_000913/4105565‑4106044 | gTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCa < 1:297115/251‑1 (MQ=255) gTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATgcgc < 1:64344/251‑1 (MQ=255) cgaagctcttccgaactaGCCTTCCATCTCGATCATCTCCTTTAATAGGGAAGTCAGCTCCCGGTCATCAGCATCTAACAGGAATTTATGCATTGTTTAAATACCTCCGAGTCATAAATTACGTCATCAGACGTCGCTAATCCATGACTATACGTTGTGTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATa < 2:166883/234‑1 (MQ=255) aGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATa > 1:166883/1‑234 (MQ=255) ttCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGcc > 1:238696/1‑251 (MQ=255) tacaacacGAGCAGCTCCATTAACAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAAGACCTCCGAGGCAGAAAGTTCGTCATCAGGCGGCGCTAATCCATGACTTTACGTTGGTTTACACCCCCAGACGCAAGTTTTCAGCCTGAATCGTAAACTCCCTAT‑CGTGGAAGCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGc < 1:161582/242‑1 (MQ=255) cGAGCAGCTTCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATTCCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGGTTGCAGCCTTAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAAc < 2:244639/248‑1 (MQ=255) agcagcTCCTTTAATAGGTAAGTCAGCTCTCGGTCATCATCAACTAACAGTAGTTTATTCATTGTTTGAATACCTCCGAGGCAGAAATTACGTCAACAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTGGGAGCAAATGATGCGCATAGTTACCGCGGCCGTCATGGCCTCAACGCTgg < 2:152114/251‑1 (MQ=255) tttAAATACCTCCGAGGAAGAAATTACGTAATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGCCGGTTCAGGCGATAACTGGCATCCGGATga > 1:108669/1‑248 (MQ=255) cGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcg > 1:334236/1‑251 (MQ=255) gctgatatgccggcagcataCGTCGTTAATCCTTGACGTTACTTTTGTGTACACCCCTTGACGCATGTGTGCATTCTGAATCGTTAACGCTC‑ATACGTTGAATCGCTACAGTAAGATGTTAGGAGCAAATGATGCGGATAGTTACCTCTGCCGGAATGGCCGCACAGCTGGCAGTCCGTTCATTAAGCTACGCTGCTTAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGACCTTActcagcgctat < 2:137071/232‑4 (MQ=255) aCGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGCCGCATGTTTGCAGCCTGCATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTCGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTCCGCAGCGCAGTACGCAGAGc > 1:145271/1‑251 (MQ=255) ccGCTAATCCATTCCTTTACGTTGTTTTAACCCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGGTACCGCGGCCGTCATGGCCGCAACGCTGGCAGTCAGTTCATTAAGCCACTCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACg < 2:349100/250‑1 (MQ=255) gACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCGCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTaa < 1:60526/251‑1 (MQ=255) cccccTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagc > 1:136371/1‑250 (MQ=255) ccttaagCATTTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAATTGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGGCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAt < 2:302219/245‑1 (MQ=255) ccTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagc > 1:14169/1‑247 (MQ=255) gACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc < 1:99317/250‑1 (MQ=255) cGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGACACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCg > 1:216633/1‑249 (MQ=255) gTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCtt < 1:155552/251‑1 (MQ=255) agcttGAATCGTAAATTCTTAAC‑CGGTGAATTGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTGCCGCCGCCGTCATGGCCTCAACGCTGGAAGTTAGTTCAATAAGCCACGCTTCTGAAGTCGGTTCAGGCGATAACTGTCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAACTAACAGCAGCGTCAGCAGATGCGATATCTTATGCaa < 2:75505/247‑1 (MQ=255) aaTCGCGACAGAAAGATTTTAGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGtt > 1:343833/1‑250 (MQ=255) gACAGAAAGATTTTAGGAGAAAATGATGCGAATAGTTACCGCTGCCGTAAGGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATCACTGGCATCCGGGTGAAGAAATTACGCAGCGCAGTAGGCAGAGCCCTATGTTCGACGGCATAAGTTTAACCGAACATCAACGTAAGCAGATGCGAGATCTTCTGAAAAAGGCACGGCCCGAACAGCCTCCTGTTAATGtt > 2:229789/1‑250 (MQ=255) | GTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTCCGAGGCAGAAATTACGTCATCAGACGTCGCTAATCCATGACTTTACGTTGTTTTACACCCCCTGACGCATGTTTGCAGCCTGAATCGTAAACTCTCTAT‑CGTTGAATCGCGACAGAAAGATTTTGGGAGCAAATGATGCGCATAGTTACCGCTGCCGTCATGGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTT > NC_000913/4105565‑4106044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |