| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,084,903 | 0 | T | G | 91.2% | 111.1 / ‑2.9 | 34 | N307T (AAC→ACC) | fdoG | formate dehydrogenase O subunit alpha |
| Reads supporting (aligned to +/- strand): ref base T (2/1); new base G (14/17); total (16/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGCGTCTTTTGGCGTACCACAGATGTTTTCAACCACATCTGGCGTGTAGCGGGAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGTTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCTTCCATCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGTTACCGCCCATCACCACGACG > NC_000913/4084664‑4085148 | aCGCGTCTTTTGGCGTACCACAGATGTTTTCAACCACATCTGGCGTGTAGCGGGAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCt < 1:253865/251‑1 (MQ=255) cgTCTTTTGGCGTACCACTGATGTTTTCAACCACATCTGGCGTGTAGCGGGAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGGCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCCCGATCAGGCTGGCGGTGGTATAGGCTTCg < 1:347460/251‑1 (MQ=255) cGTACCACAGATGTTTTCAACCACATCTGGCGTGTAGCGGGAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGGTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTcgc < 1:42027/251‑1 (MQ=255) cacatattttctCAACCCCATCTGGCGTGTAGCCGGAAACGTGCTGTTTCAGCATTTTCCCCACGCAGCGCGGATGTTGCAGCGTTGTATCGCTTTTGGCTAAGCCGTTGTCGTCCAGTTCATAAGTCCAGGAGTATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACCGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTg < 2:86463/240‑1 (MQ=255) aTGTTTTCAACCACATCTGGCGTGTAGCGGGAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAAttt > 1:115171/1‑251 (MQ=255) aCCACATCTGGCGTGTAGCGGGAAACGAGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCAAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGCTCAGGCGGGCGTTGGTATAGGCTTCGGTGTATTCGCGGTTGCATTTTTCAtattt > 2:145694/1‑247 (MQ=255) gAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGACCAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCACTACGcc > 1:129870/1‑251 (MQ=255) ccttGCTGTTTCAGCAATGTCCACACGCTGCGGGGATTTTGCAGTGTGGTATCTCGTTGGTGGAAGCCGTTTTCGTCCAGTTCATGAGTCCGGGTGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCTGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGa < 2:78830/248‑1 (MQ=255) gtgggttCAGCAAGTGCCACACGCGGCTCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAATCCTTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACGTGCGTTTTTCCGCGTCGTAGCCGGTGATCAGTCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTGCAGCAGGTACAGCAATACGCCTGACAgg < 2:235849/246‑1 (MQ=255) gCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGATGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGAATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTAAAGCAATACGCCTGACAgg > 1:215183/1‑251 (MQ=255) ttCAGCAAGTTCCACACGCAGCGCGGATGTTGTAGCGTGGTAGCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAg < 2:251068/250‑1 (MQ=255) ccACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTAc > 1:223425/1‑251 (MQ=255) cAGCGCGGAGGTTGCAGCGTGGTTTCGCGTTTGTCGAAGCCGGTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACg < 2:200555/251‑1 (MQ=255) gcgGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGGGGATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAAt > 1:74804/1‑250 (MQ=255) aTCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGcg < 1:128541/250‑2 (MQ=255) aTCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCt < 1:128553/250‑1 (MQ=255) tCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGGCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTa < 2:118709/250‑1 (MQ=255) cgTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAg < 1:51224/214‑1 (MQ=255) cAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCATCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGAATGCAGCTACAGCCGCCGTACGCGTAAAGCGAgg > 1:25595/1‑249 (MQ=255) aGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCATTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGgatc < 1:231345/251‑1 (MQ=255) gTTCATAAGTTCAGGATGATTTATCGTACTTGCGTTTTCCCGCGTCGTAGCCGGTGAACAGGCACTCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTAGAGGCTTCGGTTTATTCGCGGTTGAATTTTTCATTGTCCAGCAGGTACAGCAAGACGCCTGACAGGAAAGCAATGTCGGTAACGGAACGAATAGGGGCCTAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGgttcg < 2:272310/251‑1 (MQ=255) ttATCGTACTTGCGTTTTTCCGCGTCGTATCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCCGACAGGAAAGCCATGTCAGTACCGGAACCAATAAGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGCAAAGCGAGGGTCGATCACAATCAGCTT‑cgcccc > 2:61744/1‑248 (MQ=255) ttATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGcc > 1:137186/1‑251 (MQ=255) gTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTtgg > 1:5380/1‑250 (MQ=255) ttGCGTTTTTCCGCGTCGTAGACGGAGACCAGGCCATCTTCAACGACGTAATCATCCCGCACGAACAGGCTGGCGTTGGTATAGGCTTCGGAGGATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTATAGCAATACGCCTGACAGGAAAGCAATGACAGGACCGGATCGAATAGTGGCATAGACGACAACTACCGCCGCCGTACGCGAAAAACGAGGATCGATAACAATCAGCTT‑cgtccagttgtgact > 2:324788/1‑238 (MQ=255) gTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGGATAGGCTTCGGTGTATTCGCGGGTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGACTAGGGGCATAGGAGTCAGCTACCGCCGCCGAACGCGTAAAGCGAGGATCGATCACACACAGCTTACG‑GCCGGTGTGAAttttt > 2:128714/1‑250 (MQ=255) tttCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCt > 1:11627/1‑251 (MQ=255) tGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATa < 1:205176/149‑1 (MQ=255) aCAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGGGGGTATAGGCCTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAAGTACAGCAATCCGCCTGACAGGAACACAATGTCAGTCCCGGAACGAATAGGGGCTTAGTAATCAGCTAACGCCGCCGTACCCTGAAAGCGTGGATAGATCCCAATCAGCAT‑CGCCCCGTTGTGATATTTGGCGTCCACCGCCCAGCGGGAccc > 2:81560/1‑250 (MQ=255) aTCCTCACGCACGATCAGGCTGGCGTTGGTATAGGATTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCTTCCATCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGt < 1:97753/251‑1 (MQ=255) cTCACGCACGATCAGGCTGGCGGTGGTAAAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTAAGGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCCCAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCTTCCATCGCCCAGCGGAACCCGACCGGGGGAGCTTCAGCGGCGTTAc > 1:307930/1‑251 (MQ=255) cacgcacgATCAGGCTGGCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCTTCCATCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGTTAc < 1:128714/249‑1 (MQ=255) cgATCAGTCTGGCGGTGGTATCGGATTAGGAGTACTCGCGGCTTAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGCAAGCCATGTCAATACCGGAAAGAATAGGGGCATAGCAGTCAACGACCGCCGCCGTACGCGTAAAGAGCGGAGCGCACACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCGTACATCGCCCAGCGGAACCCGCCCGGGTGGGCTTCAgcggccttcacgcccctc > 2:306422/1‑238 (MQ=255) ggCGGTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCTTCCATCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGTTACCGCCCATCACCacgacg < 1:47815/250‑1 (MQ=255) | ACGCGTCTTTTGGCGTACCACAGATGTTTTCAACCACATCTGGCGTGTAGCGGGAAACGTGCTGTTTCAGCAAGTTCCACACGCAGCGCGGATGTTGCAGCGTGGTATCGCGTTTGGCGAAGCCGTTTTCGTCCAGTTCATAAGTCCAGGAGGATTTATCGTACTTGCGTTTTTCCGCGTCGTAGCCGGTGAACAGGCCATCTTCAAAGCCGTAATCCTCACGCACGATCAGGCTGGCGTTGGTATAGGCTTCGGTGTATTCGCGGTTGAATTTTTCATTGTTCAGCAGGTACAGCAATACGCCTGACAGGAAAGCAATGTCAGTACCGGAACGAATAGGGGCATAGTAGTCAGCTACCGCCGCCGTACGCGTAAAGCGAGGATCGATCACAATCAGCTT‑CGCGCCGTTGTGAATTTTGGCTTCCATCGCCCAGCGGAACCCGACCGGGTGAGCTTCAGCGGCGTTACCGCCCATCACCACGACG > NC_000913/4084664‑4085148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |