| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,961,662 | G→T | G329V (GGC→GTC) | rep → | ATP‑dependent DNA helicase Rep |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,961,662 | 0 | G | T | 95.0% | 49.0 / NA | 20 | G329V (GGC→GTC) | rep | ATP‑dependent DNA helicase Rep |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (12/7); total (12/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGTTTTTCTCTCGTCCTGAAATCAAGGACTTGCTGGCTTATCTGCGCGTGCTGACTAACCCGGACGATGACAGCGCATTTCTGCGTATCGTTAACACGCC > NC_000913/3961422‑3961902 | ccTGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATAGCGCTGAGCTAAAAGTATGAAGCGCGAATTACGAAGAACATGAGGCTGAGCGCGTTATTGTCGAGCTGATc > 2:101379/1‑251 (MQ=255) ccgcgCTGCACGTCCGCAAAACCTGGTGCTGCTGAGTAAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACGAGCGCTCTTCCGGGCGTATTCTGACAGCGGCGAACCTCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGCCTGTTCTCCGAACTGGGTTCTGGCGCGGAGCTAAACGTATTAAGCCCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGTGCTGactgccc > 2:157981/2‑245 (MQ=255) ccTGGTGATGCTGAATCAGGATTTTCCGGCGCTGCAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCAGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTCAGCGCGATTAACGACGAAAATGAGGCTGAGCGCGTTACTGTCGAGCTGATAGCCCATCAATTACTCACTAAAACg > 2:47828/1‑250 (MQ=255) gTCAGGATGGTCCGGCGCGGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCTGATTCTGAAAGCGGCGAATATCCTGATCGCCAATAACCCGCACGGCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAATCGCAGTACAAAGATTAc < 2:253298/251‑1 (MQ=255) cAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACGGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGc < 1:18428/251‑1 (MQ=255) tGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGACCATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTAATGTCGAGCGGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTacccctaagtagcggg > 1:216365/1‑236 (MQ=255) cAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCGCTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGtt < 1:151437/251‑1 (MQ=255) cAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGtt > 1:203116/1‑251 (MQ=255) cAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAGTACGCCATTCTGTATCGCGGTAACCATCAGTCGCGGGTGtt < 1:95245/251‑1 (MQ=255) cTATCGCTCATCCGGGCGCATTCTGAAAGCGGCGAACATCCTAATCGCCAATCACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGTAGCTAAACGTATTAAGCGCGAATAACGTAGCACATGATGCTAGGCGCGTTACTGTCGAACTGATCGCCAATCACTTCGGCAATACACCGACGATCAATGATTACGCCATTCTTTATCGCGGTAACCATCAGTCACggaggttttaa > 2:216694/1‑241 (MQ=255) cGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAAt < 1:312098/250‑1 (MQ=255) ttCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGc > 1:261670/1‑251 (MQ=255) cgacgctcttcagatctcGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTAGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGCAAAATTCCGGATGGAAAACGGCATACCGTACAAAATATc > 2:240228/18‑249 (MQ=255) aCCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGttt < 1:101379/251‑1 (MQ=255) ccGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGttttt > 1:102584/1‑251 (MQ=255) cGTCTTTGAAAAGCGTCTGTTCTCCTAACTGGGTTCTGGCGCGGATCTAAAAGTATTAAGCGAGAATAACGAAGAACATGTGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGAAACCATAAATAGAGGACGTTTGAAAAATTCCTGATGAAAATACGCACCACGAACAAAGTATATGGTGGAACGGTGTTTTtatct > 2:236275/1‑250 (MQ=255) ccGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGTTTTTCTCTCGTCCTGAAATCAAGGACTTGCt < 1:273863/250‑1 (MQ=255) aaaGTATAAAGCGCGTGTAACGAAGACCATGAGCCTGAGAGCGTTACTGGCGAGCTGATCGCCCATCACATCGTCAATAAAACGCAGTACAAATAGTACGCCATTCTTTAGCGCGGTACCCAGCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGTTTGTCTCTCGTCCTGAAATCAAGGACTTGCTGGCTTATCTGCGCGTGCTGACTAAccc < 2:173217/251‑1 (MQ=255) aGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGTTTTTCTCTCGTCCTGAAATCAAGGACTTGCTGGCTTATCTGCGCGTGCTGACTAACCCGGACGATg > 1:101957/1‑250 (MQ=255) cgcgTTACTGTCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGTTTTTCTCTCGTCCTGAAATCAAGGACTTGCTGGCTTATCTGCGCGTGCTGACTAACCCGGACGATGACAGCGCATTTCTGCGTATCGTTAACACGcc > 1:95147/1‑251 (MQ=255) | CCTGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTCCTGATGCAAAACCGCATCCCGTACAAAATATCTGGTGGTACGTCGTTTTTCTCTCGTCCTGAAATCAAGGACTTGCTGGCTTATCTGCGCGTGCTGACTAACCCGGACGATGACAGCGCATTTCTGCGTATCGTTAACACGCC > NC_000913/3961422‑3961902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |