| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,903,234 | G→A | V156V (GTC→GTT) | bglB ← | 6‑phospho‑beta‑glucosidase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,903,234 | 0 | G | A | 90.5% | 60.0 / ‑1.8 | 23 | V156V (GTC→GTT) | bglB | 6‑phospho‑beta‑glucosidase B |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (16/3); total (20/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01 | |||||||||||
GCTGGCAGGTGAGGGGGTAAACCAGCCCACCGAGAAGCATATTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAGACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCATTCGGTTCGACTTCGTCGCCCTGAGGGAAAATTCGCGCCCAGGCAATGGAAATACGCAGACAGGTGAAGCCCA > NC_000913/3902990‑3903478 | gctggcAGGTGAGGGGGTAAACCAGCCCACCGAGAAGCATATTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGTCAACCAGTTGATGGTGGATAGCCTGATAACCTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCTGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTg < 2:103643/251‑1 (MQ=255) tggcagtagAGGGGGTAAACCAGCCCACCGAGACGCATATTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGGCAACCCGTTGATGGTGGATAGCCTGCTAACCTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTAATGTTGGTAGCGAGTAAAAACCGTGCg > 2:48041/9‑251 (MQ=255) gAGGGGGTAAACCATCCGTCCGAGAAGCATAGTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAAt < 1:59061/251‑1 (MQ=255) cAGCCCACCGAGAAGCATATTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGAt > 1:285696/1‑251 (MQ=255) ccACAGAGAAGCATATTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAACCGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGAGCGGGCGTAATGCTCGAAGTGATCGAt > 1:218150/1‑251 (MQ=255) aTGACAGGCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCat > 1:221174/1‑251 (MQ=255) gCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCAt > 1:57028/1‑251 (MQ=255) cTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTa > 1:10812/1‑250 (MQ=255) tcttctGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGt > 1:40366/1‑250 (MQ=255) gCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAAAGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGa > 1:201589/1‑204 (MQ=255) cccGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAGACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTc > 1:117428/1‑251 (MQ=255) cccGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTc > 2:95227/1‑101 (MQ=255) cccGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGGTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTc < 1:95227/101‑1 (MQ=255) cgcgTGTAACGACATGTAGATTTCATTAACCGTCAGCCCTAACACCACTTTATGTTGGTAGCGAGTAAACACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCATCGGCTTGTTCCCCGCCTGCGCCATTTCATCAACCAGCCGATCGTAAAACGCTAAACCCGCTTCATTCGGTTctc > 2:46750/1‑249 (MQ=255) gcgTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCATTCGGTTCGAc > 1:31807/1‑251 (MQ=255) cgTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATCTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGCAGTGATCGATGACCGCTCGATTAGCCCAAACGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCATTCGGTTCGACt > 1:145776/1‑251 (MQ=255) aaCGACATGTTGATTTCGTTAAACGTCAGCCATAACGCAACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGATCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGAAATTTCATCAAACAGCCGCACGTAAAAAGCTAACCCCGCCCCATTCGGTTCGACTtcgtc > 2:104609/1‑251 (MQ=255) cGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATAAACCACCCGATCGTAAAACGCTAACCCCGCTCCATCCGTTTCAACTtctcccc > 2:283899/1‑246 (MQ=255) gTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGATGGTAGCGAGTAAAGACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAACCGCTAACCCCGCTTCATTCGGTTCGACTTCGTCGCCCTg > 2:87429/1‑249 (MQ=255) cAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCATTCGGTTCGACTTCGTCGCCCTGAGGGAAAATTCGCGCCCAgg > 1:256611/1‑251 (MQ=255) aTGTTGGTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCCTTCGGTTCCACTTCGTCGCCATGGGGGAAAATTCGCGCCCCGGCAATGGAAATACCCAgcc > 2:307429/1‑249 (MQ=255) gTAGCGAGTAAAAACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCATTCGGTTCGACTTCGTCGCCCTGAGGGAAAATTCGCGCCCAGGCAATGGAAATACGCAGACAGGTg > 1:104514/1‑250 (MQ=255) gTAAACACCGTGCGGGCGTAATGCTCGACGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTAATCAAAAACACGATCGCAAAACGCTAACCCCGCTTCATTCGGTTCGACTTAGTCGCCCTGAGGGAAAATTCACGCCAAGGCACAGGAATTAAGCAGACAGGGGAAGCCCa > 2:270249/1‑250 (MQ=255) | GCTGGCAGGTGAGGGGGTAAACCAGCCCACCGAGAAGCATATTGCCGATTTTCGCTTCGGGGAGCAGGCTATGACAGGCTTTAACTGCCCGCGCACTGGCAACCAGTTGATGGTGGATAGCCTGATAAACTTCCGCCTCGCCACTCTCTTCTGCCAGCCCCACGCCCGTGAATGGCGCGTGTAACGACATGTTGATTTCATTAAACGTCAGCCATAACGCCACTTTATGTTGGTAGCGAGTAAAGACCGTGCGGGCGTAATGCTCGAAGTGATCGATGACCGCTCGATTAGCCCAACCGCCGTAGTTTTTCACCAGCCCATATGGCATTTCGTAATGGGATAACGTTACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTCATTCGGTTCGACTTCGTCGCCCTGAGGGAAAATTCGCGCCCAGGCAATGGAAATACGCAGACAGGTGAAGCCCA > NC_000913/3902990‑3903478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |