| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,865,885 | A→G | V130A (GTT→GCT) | yidE ← | putative transport protein YidE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,865,885 | 0 | A | G | 96.3% | 70.4 / ‑5.9 | 28 | V130A (GTT→GCT) | yidE | putative transport protein YidE |
| Reads supporting (aligned to +/- strand): ref base A (1/0); major base G (11/15); minor base T (1/0); total (13/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
CAGCGCGCCGCCATTGGTGCGTGAAGACTCGTGCTGCTGAGCTTCTGTCTCGACATTGACGCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAACCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGTATAAACGAACAGGATCAGGCCAAATTCCTGAATAACATGCAGCATATCGCTACTTA > NC_000913/3865665‑3866113 | cAGCGCTCCGCCATTGGTGCGTGAAGACTCGTGCTGCTGAGCTTCTGTCTCGACATTGACTCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCTCCGGAGAAAATCCCCAGCACTAcc < 1:253069/250‑1 (MQ=255) gtcgcgcCGCTATTGGTTCGTGAAGACTCGTGCTGCTGAGCTTCTGTCTCGACAGTGACGCGGAAAATAACCCTCATCATCCACATGGTGAACAAAATCTCGCCAATGCCGAATGGATACGTCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCCTGCGTATTGGTAGCCGCACCGGAGAAAATCCACAGCACTACCgg < 2:37155/249‑1 (MQ=255) gtccgagctgTGCGTGAAGACTCGTGCTGCTGAGCTTCTGTCTCGACATTGACGCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTgg < 1:38712/242‑1 (MQ=255) gccATTGGTGCGTGAAGACTCGTGCTGCTGAGCTTCTGTCTCGACATTGACGCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGa > 1:84349/1‑250 (MQ=255) cGTGCTGCTGAGCTTCTGTCTCGACATTGACGCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAAGGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATTCAgg < 1:249469/251‑1 (MQ=255) gTGCTGCTGAGCTTCTGTCTCGACATTGACGCGGGAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCACCATCTGATCGAACATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGACGCACCGGAGAAAATCCCCAGCAATACCGGCAGTGGAATATCAAACAGTTTATGCa > 1:12965/1‑248 (MQ=255) tGTCTCGACATTGACGCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGAAACTCATCCCCATCTGATCGACCATTTCAATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGCGAAAATCCCCAGCACTACAGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTACCCaacc > 1:234233/1‑248 (MQ=255) caatGACGCGGAAAAAAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCgatg < 2:84349/248‑1 (MQ=255) aacccccaacagcccattGGTGAAAAATATCCCGCTAATGCTGAATTGATACGCCATCGCGTAACTCCACCCCATCTGATCGTCCATTTCCATTGGTTTACCCAGGTCGCCCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTTGAATATCAACCAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACTATCCGAACAg < 2:236089/234‑1 (MQ=255) caaccaccccaTGGGGAACAAAACCCCGCAAATGTCGAATGGATACGCCAACGCGTAACTCCTCCCCATCTGATCGACCATTCCCATTGGTGGTCCCCGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATGGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACa < 2:28380/242‑1 (MQ=255) aTCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGtt > 1:329966/1‑251 (MQ=255) cccGCAAATGCCGAATGGATACGACATCGCGTAACTCATCCCCATCTGATCGATCATTTCCATTGGTGTACACAGGTCGCGCAACATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGCGGCGTAATCCGGAGAcgc > 1:197185/1‑251 (MQ=255) ccGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGAACGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGAcgcg < 1:28229/251‑1 (MQ=255) aaTGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCaa > 1:112445/1‑250 (MQ=255) aTGGATACGCCATCGCGTAACTCATCCCCATCTGCTCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAACCGCACCGGAGAAAATCCCCAGCACTACCGGCATTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACTGATGATGACGATCAGCACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCaa > 1:165913/1‑249 (MQ=255) ggATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAaagaa < 2:112445/251‑1 (MQ=255) ccGCCAACGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGccc < 2:285184/250‑1 (MQ=255) cGCCATCGCGGAACTCATCCCCAACGGATCGACCATTGCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACGACCGGCAGTGTAATATCAAACAGTTTATGCATGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCg < 2:162049/251‑1 (MQ=255) gCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCgg > 1:256978/1‑251 (MQ=255) cATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGcc > 1:46669/1‑251 (MQ=255) aCTCTTCCCCATCTGATCGACCATTTCCATTGGGGTTCCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGaa < 2:256978/251‑1 (MQ=255) cATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATcc > 1:160655/1‑251 (MQ=255) gATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGt < 1:82540/247‑1 (MQ=255) ccATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGTATAAACGAACAGGAt < 1:329637/250‑1 (MQ=255) gTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGTATAAACGAACAGGATCAGGCCAAATTCCTGa > 1:148713/1‑250 (MQ=255) cgcAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTCTGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGTATAAACGAACAGGATCAGGCCACATTCCTGAATAAc > 1:14171/1‑251 (MQ=255) ccctgcccCCAGCGCTGGCGTATTGGAATCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGACGCCCGGCCCTACCTAAATCCAGATAGTATCAACGAACAGGATCAGGCCAAATTCCTGAATAACATGCAGCATATCGc > 1:209975/1‑251 (MQ=255) ccccCGCGCTGGAGTATTGGTAGCCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGCCCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGTATAAACGAACAGGATCAGGCCAAATTCCTGAATAACATGCAGCAAATCGCTACTTa < 2:81414/251‑1 (MQ=255) | CAGCGCGCCGCCATTGGTGCGTGAAGACTCGTGCTGCTGAGCTTCTGTCTCGACATTGACGCGGAAAATAACCCGCAACATCCACATGGTGAACAAAATCCCGCAAATGCCGAATGGATACGCCATCGCGTAACTCATCCCCATCTGATCGACCATTTCCATTGGTGTACCCAGGTCGCGCAAAATCTGCTGCCCTGCCCCCAGCGCTGGCGTATTGGTAACCGCACCGGAGAAAATCCCCAGCACTACCGGCAGTGGAATATCAAACAGTTTATGCAGGATGGCGGTAACCAGACCACCGATGATGACGATCAGAACAGCAAACAGGTTGAGGCGTAATCCGGAGACGCGCAATGAGGCAAAGAAGCCCGGCCCTACCTGAATCCCGATAGTATAAACGAACAGGATCAGGCCAAATTCCTGAATAACATGCAGCATATCGCTACTTA > NC_000913/3865665‑3866113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |