| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,783,983 | G→A | S49F (TCC→TTC) | secB ← | protein export chaperone SecB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,783,983 | 0 | G | A | 97.2% | 104.6 / NA | 36 | S49F (TCC→TTC) | secB | protein export chaperone SecB |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (18/17); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGGAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAGGGGATCCAGTCCACCACGTGCATCC > NC_000913/3783749‑3784227 | ttCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATcccg > 1:346885/1‑249 (MQ=255) aGTTGCGGGAATGTACCGCGGGATCCGCTGCTGGTGATGCACCCACGAGCATACGGGAAAAGAATGTTCGGGCAGCATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGCAAATACCGACCTGCTGAACTTCACCCAGGAACGCGGTATCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCAAGTTGGAAAGATGCCGTAtac > 1:310983/1‑244 (MQ=255) ggAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTa < 1:237302/251‑1 (MQ=255) gTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTc > 1:170191/1‑251 (MQ=255) ggctACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCCAGTTTAACTTCTGGTTGcc > 1:21127/4‑251 (MQ=255) tGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTc > 1:258242/1‑251 (MQ=255) tGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTgg > 2:245287/1‑251 (MQ=255) gCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACg < 1:238175/250‑1 (MQ=255) cGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGCGGCCGTTACGGTAACACGCAGTACAACTTCGTATACGTCATCTGCCAGTTGGGAAGATGCCGTATCCAGATCTAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGgcg > 1:100615/1‑251 (MQ=255) gAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACAAGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCtt > 2:73914/1‑251 (MQ=255) aacgtccgggtagtcagCTCCCAGGCAATGCCCTATCTCTGTGACTGCGATACCCGCGAGTGATAAAATACCGCCCGGCTGCACTTCACACAGGAACGCGGTGTCTTCTCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAACAATGCCGTATCCAGATCAATTGTAACTGCTGGTCGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCTCttataaag < 2:123772/235‑7 (MQ=255) aaTGTTCGGGCAGTATGATCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCATTCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGaa > 1:64328/1‑249 (MQ=255) cGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGatat > 1:30449/1‑251 (MQ=255) ggtcAGTATGTTTCCAGGCTATTCGCCCTCTTTGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGGACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTTACTTCTGGTTGCCAAACTTTCTGGAAAACGTGCGGCGCGGTCGGCGCTTCGAAAGAGATATc < 2:46559/248‑1 (MQ=255) cgcCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCt > 1:208636/1‑251 (MQ=255) tCGATACCCGCGAGGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAg < 2:120579/250‑1 (MQ=255) cGATACCCGCGATGGAGAAAATACCGCCCTGCTGCACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCA‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAgtg > 2:36991/1‑251 (MQ=255) cccGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTGTCTTCGCCCAAAGAGGCCGGTACGGTAACACGCAGTACCACTTCGTATCCGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACGTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTgttgtt < 2:258242/251‑1 (MQ=255) aTGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTc > 1:332817/1‑251 (MQ=255) cGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCg < 2:135469/176‑1 (MQ=255) cGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCg > 1:135469/1‑176 (MQ=255) acaGAAACGCGGTTTCTCCGCCCAAAGAGGCCGTGCCGGTAACAAGCAGTACCACATCGTATACGTGATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTTGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTc < 2:257593/251‑1 (MQ=255) caGGGACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACGTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTcc < 2:61444/251‑1 (MQ=255) cgGTTTCTTCACTCAAAGAGGCCGGTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCATTTGGAATGATGCCGTATCCCGATCAAGTTTAACTTCTGCTTGCCAATCTTTCTGGAAAACGTGCGGCTCGTTCGGCGTTTCGAAAGATATGTCCGTTGG‑ATATATACATTAGGTCTTGAAAGTCAATTCAGTGATATTATGTTCTGACATGTGTAGAAAACCCTTAAGTGAGGTCCTTAAATAc < 2:18472/251‑1 (MQ=255) gTTTCTTCCCCCAAAGAGTCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGAGATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTg < 2:30449/251‑1 (MQ=255) ggCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAAc > 1:194898/1‑251 (MQ=255) acGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTGAACTTCTGGTTGCCAATCTTTCTGGAAACCGTGCGGCGCGTTCGGCTCTTCGAAAGAGATATCC‑TTGGTATAAATACGTGGTATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTAttt < 1:328268/251‑1 (MQ=255) ccgTACCACTTCGTATCCGTCATCTGCCAGTTTGACATCTTCCTTATCCATATCAAGTTTCACTTCTGTTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAGGAGATATCC‑TTGGTATAAATACGTTGTATCTTGAACATCATTTCCGTGTTGTTTTGTTCTGACATGATTATACAACCCTTAACTGTTGTCCTTAAATACTACGAAATGTACTGCCAACTTTCACACTTTATTTccg > 2:38713/3‑249 (MQ=255) ctgcGTAAACGTCATCTGCTAGTTGGAAAGATGCCGTATCCATATCAAGTTTAACTTCTGGTTGCCAATTTTTCTGGAAAACGTGCGGCGCGTTCGGCTCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAgggg < 2:305714/246‑1 (MQ=255) cGTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATTTTTAGAAAACTCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAGGGGATcc < 1:158858/250‑1 (MQ=255) gTATACGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAGGGGATcc > 1:104952/1‑249 (MQ=255) ataCGTCATCTGCCAGTTGGAAAGATGCCTGATCCATATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACTCGTTATTTCAGCAGGGGATCCAGt < 1:128883/250‑1 (MQ=255) aCGTCATCTGCCAGTTGGAAAGATGCCGGATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTTCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑GTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAGGGGATCCAGTcc < 2:346885/250‑1 (MQ=255) cGTCATCTGCCAGTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAGGGGATCCAGTccac > 1:55304/1‑251 (MQ=255) tCATGTGCCAGTTGGAAAAATGTCGTCTCCAGAACAAGTGTAGCGTCTGGTTTCCAATCTTTCTGGAAAACGTGCGGCGCGTGCGGCGATTCGAAAGAGATAGCC‑TTGGTATTAATACGTGGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGGGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATTTAATGCCAACATTCGCACTTTATTTCAGCAGTGTATCCAGTccacc < 2:317206/250‑1 (MQ=255) gTTGGAAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGCATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCACCAGGGGATCCAGTCCACCACGTGCATcc > 1:59159/1‑250 (MQ=255) | TTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCTGCCAGTTGGGAAGATGCCGTATCCAGATCAAGTTTAACTTCTGGTTGCCAATCTTTCTGGAAAACGTGCGGCGCGTTCGGCGCTTCGAAAGAGATATCC‑TTGGTATAAATACGTTGGATCTGGAAAGTCATTTCAGTGTTGTTTTGTTCTGACATGTGTAGAAAACCCTTAAGTGTTGTCCTTAAATACTGCGCAATGTAATGCCAACGTTCACACGTTATTTCAGCAGGGGATCCAGTCCACCACGTGCATCC > NC_000913/3783749‑3784227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |