| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,474,539 | T→C | N5S (AAC→AGC) | rpsL ← | 30S ribosomal subunit protein S12 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,474,539 | 0 | T | C | 90.6% | 86.4 / 0.9 | 32 | N5S (AAC→AGC) | rpsL | 30S ribosomal subunit protein S12 |
| Reads supporting (aligned to +/- strand): ref base T (3/0); new base C (13/16); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.28e-01 | |||||||||||
GTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTTTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTGCTTAACCGTAAGTCTGACGAAATCAGTATAGTCAATGAGAATGATGTCGTTCGAAATTTGACC > NC_000913/3474337‑3474764 | gtgACCTTCACCACCGATGTAGGAAGTAACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTTTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGTGAGTACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTac > 2:168961/1‑249 (MQ=255) ccGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAc > 2:267970/1‑251 (MQ=255) gATGTAGGAAGTCACTTCGAAACCTGTAGTCAGACGAACCCGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaaa < 2:238606/248‑1 (MQ=255) gATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaaa > 1:238606/1‑248 (MQ=255) gTAGGAAGTCAATTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTACTGGTTTTAGCTTTTGCTTCGTAAACACGAAATAAAACGTCCt > 1:331124/1‑251 (MQ=255) aaGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTcacac > 2:165626/1‑251 (MQ=255) tCGAAGCCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGa < 1:268863/250‑1 (MQ=255) aaCCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACg < 1:20645/251‑1 (MQ=255) ccgttaggaagacgaatattgCATACTGTACGCAGCGCGGAGTTCGTGTTTGTAGGAGTGTTAGTAGATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCAGGTTGCTTTTCGCAACTTTGCGAGCACGTGGGTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGTTCTTGGTTTTAGCTTTTGCCTCGTAAACACGTAATAATACGTCTTCACACAATAGGAGGACGcc < 2:155698/231‑1 (MQ=255) ttAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCAAACAATATGAGGACGCCGa > 1:31519/1‑250 (MQ=255) gTCAGACGAACATGGCATACTTTACGCAGCGCGTAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTGTAGCTTTTGCTTCTTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAAttt < 1:224463/251‑1 (MQ=255) gAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAg < 1:153318/247‑1 (MQ=255) gAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGCAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATCGATCATGGTTTTCGCTTTTGCTTCGTAAACACGTAATAACACGTCCTCACACACTCTGTGGACGCCGAATTTTAg > 2:153318/1‑247 (MQ=255) cGGCATACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGcc < 1:91083/251‑1 (MQ=255) aTACTTTACGCAGCGCGGAGTTCGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGaaa < 2:31519/251‑1 (MQ=255) cgcgGAGTACGGTTTTGTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGaaa < 1:264195/251‑1 (MQ=255) gtAGGAGTGGTAGTATATACCCGAGTACATTCGCCGCGTATGTGCGTGCATGCTTCCGGCGCAGGCCCGGTGCTTTTCGCAACTTTGAGAGCTCGTGGTTTGCGTTCCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCGCACACAATATGATGACGCCGAATTTTAGGGAGATGCCGAATAGGTGGCATGAAATATACAACGATCCCg < 2:56402/249‑1 (MQ=255) ggAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGCAACGGTGTCAAGAAATATACAACGATCCCGCCAt > 2:93567/1‑251 (MQ=255) aGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATCCAACGAt > 2:178308/1‑241 (MQ=255) aGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGAt < 1:178308/241‑1 (MQ=255) ggTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCa < 1:83777/251‑1 (MQ=255) gtagtaTATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCCCACAATATGAGGACGACGAATTTTAGGGCGCTGCCGAAAAGGTGTCAAAAAATCTACAACGATCCCGCCATCAcc > 2:298514/1‑249 (MQ=255) aCATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTg > 1:31527/1‑251 (MQ=255) aactcctagTTTTTGCGTGACTGCTTCAAGCGCAGTCTCGTTGCTGTTCGTAACTTGGTGAGTACGGTGTTAGGGTACCAGGTGGCTAACTGTATCCATTAAATAGGTCTTGGTTTTAGCTTTGGCTTCGTAACCACGTAATAAAACGACTACACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGGCAAGAAATATCCAACGCTCCCGCCATCTCCAGGCCATCTGGCTGGGGTGCtt < 2:260082/243‑1 (MQ=255) ttgtGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTGCTTAACCGTAAg < 1:95271/247‑1 (MQ=255) gCATGCTTCCAGCGCAGGCACGATGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGACGATGCCGAAAAGTGGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGGGCTTAACCGTAAGTCTGACGa > 2:283123/1‑250 (MQ=255) aTGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGAt < 1:177545/166‑1 (MQ=255) aTGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGAt > 2:177545/1‑166 (MQ=255) ggCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATGTGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTGCTTAACCGTACGTCTGACGAAATCAGAATAGTCAATg > 2:58333/1‑251 (MQ=255) aCTTTGCGAGCACGAGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAGTAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGAAATAAAACGTCCTCACACAATATGAGGACGCCGCATTTTAGGGCGATGCCGCAAAGGTGTCAAGGAATATACAGCGATCCCGACATCACCAGGCCATCTGGCTGGGGTGCTTAAACGTATGTCTGACGAAATCAGTATAGGCAGTGAGAATGATGTCGGTCGa > 2:150038/1‑250 (MQ=255) cTTTGCGAGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAACACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTGCTTAACCGTAAGTCTGACGAAATCAGTATAGTCAATGAGAATGATGTCGTTCGaa > 1:303002/1‑250 (MQ=255) aGCACGTGGTTTGCGTACCAGCTGGCTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTGCTTAACCGTAAGTCTGACGAAATCAGTATAGTCAATGAGAATGATGTCGTTCGAAATTTGAcc < 1:267970/251‑1 (MQ=255) | GTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTTTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGATCCCGCCATCACCAGGCCATCTGGCTGGGGTGCTTAACCGTAAGTCTGACGAAATCAGTATAGTCAATGAGAATGATGTCGTTCGAAATTTGACC > NC_000913/3474337‑3474764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |