New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	18 (0.620)	17/484	0.6	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

TCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCT  >  NC_000913/2102703‑2103158                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                    tCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCACGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCt                                                                                                                                                                                                                <  1:92180/250‑1 (MQ=14)           aaGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATg                                                                                                                                                                                                      >  1:178933/1‑250 (MQ=35)              gTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTT‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGacac                                                                                                                                                                                                  <  1:321422/251‑1 (MQ=38)                                ccTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCCTGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCCC‑CAGATGACAAACATGATCTCATATCAAGGACTTGTTCGCACCTTCCTTACTCCCTAACATAAATGACACAATAATATCAGAAAGcac                                                                                                                                                                                >  1:44467/1‑251 (MQ=255)                                          aaaCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAAtttt                                                                                                                                                                      <  1:102973/251‑1 (MQ=255)                                                   gATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTACTCCCTAACATAAATGCCACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGa                                                                                                                                                              >  2:274971/1‑250 (MQ=255)                                                           ccaccaTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATg                                                                                                                                                     <  1:321995/251‑1 (MQ=255)                                                                  ggtttGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAt                                                                                                                                              <  2:72391/249‑1 (MQ=255)                                                                           tGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTc                                                                                                                                      >  1:328771/1‑250 (MQ=255)                                                                               aGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAtctc                                                                                                                                 <  1:274971/251‑1 (MQ=255)                                                                                      gCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGGTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTTACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCTCTTCATCTCGGAAc                                                                                                                            >  1:97750/1‑249 (MQ=255)                                                                                      gCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCGGACGGCGCTTACTGCTGACGTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTCTGGCTC‑CAGATGACAAACACTATCTCATATCAGGGACGTGTTCGCCCCTTCCTTAATCCCTGACATAAATGACACAATAAAATCAGAAATCACAGGAAATTTTCTGACGGAAGAATCATGTAAAGATTTCGCTTCATCTCGGAACa                                                                                                                           <  2:38386/250‑1 (MQ=18)                                                                                           aTGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCAt                                                                                                                      >  1:169490/1‑250 (MQ=255)                                                                                                     aGAAAGTCTATTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCTAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAACGCACAGGAAATTTTCTTACGGAATAATCCTGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGAACTaa                                                                                                            >  2:124283/1‑250 (MQ=255)                                                                                                                          gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTGGATGACGCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATGTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGAc                                                                                      <  2:178933/251‑1 (MQ=255)                                                                                                                           aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGAc                                                                                      >  1:30509/1‑250 (MQ=255)                                                                                                                                gcTTACTTCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATAttt                                                                                <  2:168896/251‑1 (MQ=255)                                                                                                                                         tgAATTCACTGTCGTCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGAAAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCATCATCTCGGAACAGGAATAAAGTACTAAATGCATAACGCTTACTTTCGCCATATTAAatatattt                                                                       >  2:189824/1‑249 (MQ=25)                                                                                                                                                actttccgctcaGGTAAGTTGATTGCGCATGATGAACTCTTTTCTTTTGCTCTCA‑ATGACAAACCTGATCTCATATCATGTACTTGTTCGCACCTTCCTCAATCCTTACCATAACTGACACAATAAAATCAGAAAGCTCAGGAAATTTTCTTACTGAATAATCATGTAAAGATTTCGCTTCATCTCGTATCATGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTTATCTATGTCAGCaaa                                                                <  2:195041/240‑1 (MQ=255)                                                                                                                                                                           cATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCggg                                      <  1:124283/250‑1 (MQ=255)                                                                                                                                                                                 gaaaccTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCac                                >  2:217466/5‑249 (MQ=255)                                                                                                                                                                                   agtcTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATAACAGGGACTTGTTCGCACCTTTCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTGTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCaaaaa                             <  1:42080/248‑1 (MQ=255)                                                                                                                                                                                        gTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCGTCATGATGATATCTGGATTCAAAAACaa                          <  2:328771/249‑1 (MQ=255)                                                                                                                                                                                                        atgacaaaacggATCTAATATCAGGGACTTGTACGCACCATCCTTAATCCCTAACATAAATGACAAAATAAAATCAGAAAGCACAGGAAATTTTATTACGGAATAATCCTGTAAAGATTTCGCTTCATCTCGGAAAAGGCATAATGTACTAAAAGCATAACGATTAATTTCGACATATTTACTATATGTCAGCAAATCATAATGCTTCTTGATGATATCGGGATTCAAAAACAAAATGTAATCATAATCTg         >  2:231051/12‑251 (MQ=255)                                                                                                                                                                                                               aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATATGCGGGTCt  >  1:209720/1‑251 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                    TCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTC‑CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCT  >  NC_000913/2102703‑2103158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.