New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	315229 =	NA (NA)	17 (0.590) +TCA	16/478	0.7	100%	noncoding (1/1255 nt)	IS3	repeat region
	?	NC_000913	1107615 =	0 (0.000)					coding (1261/1422 nt)	clsC	cardiolipin synthase C

TGGAATTATATGAACTCAAGCCGACGCGTGAACAAAGTAGTACGTTACACGATCGCGGCATAACCGGTAATTCCGGAGCCAGCCTGCATGCTAAAACCTTTAGCATCGATGGTAAAACGGTGTTTATCGGCTCTTTCAATTTCGATCCGCGTTCAACATTGCTCAATACTGAAATGGGCTTCGTGATAGAGAGCGAAACGCTGGCACAGTTAATTGATAAACGCTTTATTCAGAGCCAGTATGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAAATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAGAACAAAAACTTC  >  NC_000913/1107373‑1107847                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                         agacgtctgctgattttgctgtttactgcgccagttgtagagttgtgattcatacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcaatgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtaccctctgactgagagtttacttacttagccgcgtgtccactattgctgggtaagatcaGATGCGGcc                                                                                                                                                                                                                                  >  1:333223‑M2/243‑251 (MQ=255)                          ctgcgccagttgtagagttgtgattcatacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcctcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggatgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgggtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTggg                                                                                                                                                                                                         >  2:79619‑M2/218‑251 (MQ=255)                                cagttgtagagttgggattcatacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGa                                                                                                                                                                                                   <  1:232279‑M2/40‑1 (MQ=255)                                     gtagagttgtgattaatacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgcaattaaggcgcatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCCGGAACggtggggacagcaaagc                                                                                                                                                                                              >  2:161761‑M2/207‑243 (MQ=255)                                      tagcgttgtgattcatacaggctgagttcacgggctgcagcagtgacaccgatgcgttcagcacgcttccgggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttctgtcatgtgagtcacctctgactgagagtttactcacttagcagcgtttccactattgatgggtaagatcaGATGCGGCCTGGCGGCTCCATCTGGACAGGTGGGGAAGGCTCAacg                                                                                                                                                                                             >  2:19791‑M2/206‑250 (MQ=255)                                                     tacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATg                                                                                                                                                                              >  1:15330‑M2/191‑251 (MQ=255)                                                                       gctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATtc                                                                                                                                                            <  1:161761‑M2/79‑1 (MQ=255)                                                                          gcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATtct                                                                                                                                                           <  2:15330‑M2/80‑1 (MQ=255)                                                                              cagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAACGAAAGAGATTATTCTCaaaa                                                                                                                                                      >  1:206390‑M2/166‑250 (MQ=255)                                                                                                                               gtgcgaatgctgtttatggggttttttactgtttgatacggtttttgtcatgtgagtcatctttgactgagagtttactcacttagccgcgtgtccactattgcggggtaagatcaGAGGCGGCTTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACGGGGTTGATCGTCATGCAAAGAAAGAGATTATTCGCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCg                                                                                                    <  2:314290‑M2/135‑1 (MQ=255)                                                                                                                                    aatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATAtt                                                                                               <  1:115437‑M2/140‑1 (MQ=255)                                                                                                                                                          actggtttatactgtttttgtcatgtgagtcacctctgactgagattttactcacttagccgcttgtccattattgcggggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTa                                                                          <  1:282485‑M2/161‑1 (MQ=255)                                                                                                                                                                                          cctctgcctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATGGTAAATGTGGCTTAACGGGCTGGTGCTTTATCGTtc                                         <  1:79619‑M2/194‑1 (MQ=255)                                                                                                                                                                                                  tgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAAATGTgg                                                                   >  1:303511‑M2/50‑217 (MQ=255)                                                                                                                                                                                                  tgagagtttactcacttagccgcgtgtccactatggctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAAATGTgg                                                                   <  2:303511‑M2/168‑1 (MQ=255)                                                                                                                                                                                                          tactcacttagccgcgtgtccactattgctgggtaagatcaGATGCGGCCTGGCAGCTCCGGCTGGACAGGTGGGGACGGTTCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAAATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAAcc                          <  1:338102‑M2/209‑1 (MQ=255)                                                                                                                                                                                                                                  attgctgggtaagatcaGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAAATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAGAACAAAAACTTc  >  1:63927‑M2/18‑250 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                         TGGAATTATATGAACTCAAGCCGACGCGTGAACAAAGTAGTACGTTACACGATCGCGGCATAACCGGTAATTCCGGAGCCAGCCTGCATGCTAAAACCTTTAGCATCGATGGTAAAACGGTGTTTATCGGCTCTTTCAATTTCGATCCGCGTTCAACATTGCTCAATACTGAAATGGGCTTCGTGATAGAGAGCGAAACGCTGGCACAGTTAATTGATAAACGCTTTATTCAGAGCCAGTATGATGCGGCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTATTCTCAAAAAAGAACCCGCCACCAGTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAAATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAGAACAAAAACTTC  >  NC_000913/1107373‑1107847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.