New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	23 (0.790)	22/484	0.3	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 791602	0 (0.000)					coding (454/1017 nt)	galE	UDP‑glucose 4‑epimerase

GTAATCGCGTACGCCAGTACCATCTTCGGTCGGATAATCGTTACCAAAAATCGCCAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTTTTGCCGTAAGGGCTTTGCGGTGTGCCGGTCGGGAAGCTTTCAACGTATGGAATTTTGGGCTGATCGCCATAAACGGTGGCGGAGGAGCTAAAAATAAAGTTTTTGACGTTAGCGGCGCGCATGGCGCTAATCAGGCGCAGAGTGCCGTTGACATTGTTGTCGTAATATTCCAGCGGTTTTTGTACCGATTCGCCCACGGCTTTCAGCCCGGCGAAGTGGATCACGGTGTCGAT  >  NC_000913/791357‑791836                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                           gTAATCGCGTACGCCAGTACCATCTTCGGTCGGATAATCGTTACCAAAAATCGCCAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtg                                                                                                                                                                                                                                        <  1:121548‑M2/250‑5 (MQ=255)      cgcgTCCGCCAGTACCATCTTCGGCCGGATAATCGTTCCCAAAAATCGCCAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTAGGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCGCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgct                                                                                                                                                                                                                                   >  2:306771‑M2/1‑241 (MQ=255)         gTACGCCAGTACCATCTTCGGTCGGATACTCGTTACCAAAAATCGCCAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGACTGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGAAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTGTCCGTTCGGTGAGGGTCTGTTCATCCATCCGCCTTCTgttgatgctgcc                                                                                                                                                                                                                                <  2:76594‑M2/250‑13 (MQ=255)                          tctgtcgtataATCGTGACCAAAAATCGCCAGCGCGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTAATCGGAATGCCGTGCGGATCTTCGCCCATATCGCCCGGCGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCGCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaactttctgatttag                                                                                                                                                                                                                 >  2:164796‑M2/4‑221 (MQ=255)                          tcggtctgATAAGCGGTACAAAAAATCGCCAGCGAGTCGGGACGGGCGACAGCAACCTGGGGGATGGATGGCATCAGGTTATGCGGAATGCCTTGCGGATCTTCGCCCATAGCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgattta                                                                                                                                                                                                                  >  2:337432‑M2/1‑221 (MQ=255)                                               aaaaTCGCCAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGACTTGCGGATCTTCGCACATATCGCCCGAAGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGATTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgatgccaaattactgctttagtgtagatcggacgagcacacggat                                                                                                                                                                                         <  1:206000‑M2/251‑52 (MQ=255)                                                      ccAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg                                                                                                                                                                                  >  1:237552‑M2/1‑193 (MQ=255)                                                                      gCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                                                                                                                                                                   <  1:98300‑M2/250‑74 (MQ=255)                                                                        cTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc                                                                                                                                                                <  1:38841‑M2/251‑77 (MQ=255)                                                                          aCAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgctgctgccaacttactgatttagggtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctg                                                                                                                                                              <  1:346579‑M2/251‑79 (MQ=255)                                                                                                    cAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggg                                                                                                                                    <  1:66624‑M2/251‑105 (MQ=255)                                                                                                                aaTGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                                                                                                        >  1:21693‑M2/1‑135 (MQ=255)                                                                                                                                                            cAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGCTCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaccggcaaaagcaccgccggacatcagcgctatctctgctctcacagc                                                                            <  2:155208‑M2/251‑161 (MQ=255)                                                                                                                                                                ctggttGAAGTAGCGCAGCAGGGCAATGCTCCAGTCAGGCTGGGCTTTTTGCAGATCGGTGAGGAACTGTTCCACCATCAGCTTGCTggtgatactgccaacttaatgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagatactgacggggtggtgcatcacggcaaaagcaccgccggacatccgcgctatttatgctcccactgccgt                                                                         <  2:201451‑M2/248‑164 (MQ=255)                                                                                                                                                                  ggTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaacagcaccgccggacatcagcgctatctctgctctcactgccgtaa                                                                       <  1:199539‑M2/250‑166 (MQ=255)                                                                                                                                                                     tGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaac                                                                    <  1:25432‑M2/250‑169 (MQ=255)                                                                                                                                                                        aGTAGCGCAGCAGGGACATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTAGCTgttgctgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtacctcctgttcagctaatgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctcacaccgccggaaacaatgg                                                                <  2:121422‑M2/251‑173 (MQ=255)                                                                                                                                                                                         aTGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgttggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcactt                                                <  1:145025‑M2/250‑189 (MQ=255)                                                                                                                                                                                              ccATTCCGGCTGGGGTTTTTGCAGATCGGTGAGGATTTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgttggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccg                                          >  2:145025‑M2/1‑57 (MQ=255)                                                                                                                                                                                                        tGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacc                                <  1:304437‑M2/251‑205 (MQ=255)                                                                                                                                                                                                            cTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggc                                                               >  1:70989‑M2/1‑43 (MQ=255)                                                                                                                                                                                                                    aGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcacc                     <  1:33631‑M2/250‑216 (MQ=255)                                                                                                                                                                                                                                      tCCACCATCAGCTTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcccgtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctaactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacacggtacgcacaagaaaatcattgatatggc  <  1:235092‑M2/251‑235 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                           GTAATCGCGTACGCCAGTACCATCTTCGGTCGGATAATCGTTACCAAAAATCGCCAGCGAGTCGCGACGGCCTACAGCAACCTGGGCGATGTATGGCATCAGGTTATTCGGAATGCCTTGCGGATCTTCGCCCATATCGCCCGACGGATGCGCGCCAACCGGGTTGAAGTAGCGCAGCAGGGCAATGCTCCAGTCCGGCTGGGCTTTTTGCAGATCGGTGAGGATCTGTTCCACCATCAGCTTGCTTTTGCCGTAAGGGCTTTGCGGTGTGCCGGTCGGGAAGCTTTCAACGTATGGAATTTTGGGCTGATCGCCATAAACGGTGGCGGAGGAGCTAAAAATAAAGTTTTTGACGTTAGCGGCGCGCATGGCGCTAATCAGGCGCAGAGTGCCGTTGACATTGTTGTCGTAATATTCCAGCGGTTTTTGTACCGATTCGCCCACGGCTTTCAGCCCGGCGAAGTGGATCACGGTGTCGAT  >  NC_000913/791357‑791836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.