Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,907,395	IS1 (–) +9 bp	coding (33‑41/210 nt)	cspC ←	transcription antiterminator and regulator of mRNA stability CspC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	28 (0.970)	28/484	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1907403	0 (0.000)					coding (33/210 nt)	cspC	transcription antiterminator and regulator of mRNA stability CspC
*	?	NC_000913	1907395 =	0 (0.000)	23 (0.790)	23/484	0.3	100%	coding (41/210 nt)	cspC	transcription antiterminator and regulator of mRNA stability CspC
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

AAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATG  >  NC_000913/1907154‑1907649                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       aaaaaGCCGCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGg                                                                                                                                                                                                                                                       >  1:102778‑M2/1‑250 (MQ=255)     aGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggta                                                                                                                                                                                                                                                    <  1:66739‑M2/250‑5 (MQ=255)              acaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTg                                                                                                                                                                                                                                          >  1:20803‑M1/229‑251 (MQ=255)                    gaGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttatt                                                                                                                                                                                                                                    >  2:156160‑M2/1‑231 (MQ=255)                       gCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATAAGTGGATTCGATCAGATAGCTGTTACGTTACCAGCTGCCGTACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTACTACAGCCAAGACCTTTAGACTCGTTGgatagtgactccaacttcttgtt                                                                                                                                                                                                                                 <  2:276867‑M2/251‑24 (MQ=255)                        cTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGCACTCAACGTTCTGACCTTCAGCCAGAGTTTTGCAGCCATTACCCTGGATAGCGGAGCAGTGTACGAACACATCTTTGATGCCATCAGCCGGAGAACTGAAGCCAAAACCTTTAGACTCGTTGggtaatgcttacaacttattgctt                                                                                                                                                                                                                                <  2:281718‑M2/251‑25 (MQ=255)                            ataGCGAGATTGAAGCGTATTCACACTTCAGATCAGTTGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTTCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtg                                                                                                                                                                                                                             >  2:349501‑M2/1‑223 (MQ=255)                               cgtaccgggttgagaagtggtgtaagtgaactgcagttgccagggtgtacggcagtgagagctgagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCa                                                                                                                                                                                                                         >  2:82485‑M1/212‑251 (MQ=255)                                   ccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTg                                                                                                                                                                                                                     >  1:161299‑M1/208‑251 (MQ=255)                                         tgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagctctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGaaaaa                                                                                                                                                                                                                >  1:341968‑M1/202‑250 (MQ=255)                                                       tCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact                                                                                                                                                                                                 <  1:8470‑M2/251‑56 (MQ=255)                                                          gATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATATTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttt                                                                                                                                                                                              <  2:173392‑M2/251‑59 (MQ=255)                                                           aTCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                                                                                                                             >  2:66739‑M2/1‑192 (MQ=255)                                                                   ttgccatgttttacggcagtgagagcagagatagcgctgaagtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaactcagtaagttggcagcctcaccGACTCGTTGAACCACTTAACCTGACCTTTCATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGACCgcc                                                                                                                                                                                     <  2:328243‑M1/76‑2 (MQ=255)                                                                        atgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCAt                                                                                                                                                                                >  1:328243‑M1/171‑251 (MQ=255)                                                                          gttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGCAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATa                                                                                                                                                                               <  1:238630‑M1/82‑1 (MQ=255)                                                                               acggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactcaatcagtaagttggaagcatccccGACTCGTTGAACCACTTAACCTGACCTTTAATATTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCAGCAGGCATAACATa                                                                                                                                                                          <  2:165609‑M1/87‑1 (MQ=255)                                                                                   gTTACGTTAACAGCTGCGGGCCCTTTCTGGCCGTCCGGAATTTCGAACTCAACGTTCTGACCTGCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCTTCAGCCGTAGTAATGAAGCCAAAACCTTTAGACTCGTTGtgtaatgactccaacttattgatattgttttatgttcagaaaatgcccgatgactttgtcatgcagctccaccgaatttgaga                                                                                                                                                                     >  2:50124‑M2/1‑168 (MQ=255)                                                                                        agagcagagatagcgctgatgtccggcggtgcttttgccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTg                                                                                                                                                                >  1:234970‑M1/155‑251 (MQ=255)                                                                                            ccgccttccgatttatggccggcggtgcttttgccgttccgcaccaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTGATATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGacac                                                                                                                                                            >  2:325018‑M1/151‑251 (MQ=255)                                                                                                   agcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTg                                                                                                                                                     <  1:271142‑M1/108‑1 (MQ=255)                                                                                                    cGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                                                                                                                                    <  2:18337‑M2/251‑101 (MQ=255)                                                                                                      gctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCAt                                                                                                                                                  >  1:274623‑M1/141‑251 (MQ=255)                                                                                                          atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAacatagataaacatgacac                                                                                                                                                            <  1:325018‑M1/101‑9 (MQ=255)                                                                                                                      gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATaa                                                                                                                                   >  1:343405‑M1/125‑250 (MQ=255)                                                                                                                        gAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTTCCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg                                                                                                                                >  1:12542‑M2/1‑131 (MQ=255)                                                                                                                                        caccccgtcagtatctgcacaggagggacagctgatagaaaatgaggccacgggagcacctcaaaaacaccatcatacactaaaccagtaatttggcagtatcaccGACTCGGTGAACCACTTAACCTGACCTTTGTTCCTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATGACATAGATAAAACGGACACATTACTTCATGAGGCACCAATATAAGGCTCGGCATAGAAGCGGt                                                                                                                >  2:126474‑M1/107‑251 (MQ=255)                                                                                                                                             cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAAGCGGTATtc                                                                                                            <  1:233802‑M1/149‑1 (MQ=255)                                                                                                                                               ccTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgct                                                                                                         >  1:96680‑M2/1‑108 (MQ=255)                                                                                                                                                     gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTg                                                                                                                                                                                                                                                        >  2:68102‑M1/94‑102 (MQ=255)                                                                                                                                                     gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTg                                                                                                                                                                                                                                                        <  1:68102‑M1/9‑1 (MQ=255)                                                                                                                                                     gCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattc                                                                                                   >  1:328199‑M2/1‑102 (MQ=255)                                                                                                                                                         gagTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTCGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagacagccagcgacttccgtcccagccgtgccaggtgctgcctcagattccggttatgccgctcaattcgctg                                                                                               <  2:324394‑M2/251‑154 (MQ=255)                                                                                                                                                               gtaagcCATTACCCTGGATTGCGGAGAAGTGTACTAACACATCTTTGCAGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTGTgttaatgactccaacttattgatattgttttatggtcagataatgcccgatgactttgtcatgcggctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagtttatgccgctctattcgcttcgtat                                                                                          >  2:172505‑M2/3‑92 (MQ=255)                                                                                                                                                                gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAAGCGGTATTCAACGTCAACGTGTTTACTCa                                                                                        >  1:165609‑M1/83‑251 (MQ=255)                                                                                                                                                                gAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtata                                                                                         >  1:281718‑M2/1‑91 (MQ=255)                                                                                                                                                                              ggATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgatt                                                                            >  1:171769‑M2/1‑77 (MQ=255)                                                                                                                                                                                 cagaagccactggagcacctcaaacacaccatcatacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAGGCGGTATTCACCTTCAACGTGTTTACTCAGGACTTCTTTACTGaa                                                                        <  2:175908‑M1/185‑1 (MQ=255)                                                                                                                                                                                             gtACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttccctt                                                           <  1:122896‑M2/251‑190 (MQ=255)                                                                                                                                                                                                cGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcag                                                        >  1:18337‑M2/1‑59 (MQ=255)                                                                                                                                                                                                                 catacactaaatcagtaagttggcagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGtt                                        >  1:175908‑M1/34‑250 (MQ=255)                                                                                                                                                                                                                  cATCAGCCGTAGTAACGAAGCCAAAATCTTTAGACTCGTTTggtaatgactccaacttattgatagtgttttatgttctgataatgcccgttgactgtgtcatgcatctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgcttcctcagattcatgttatgccgctcaatgcgctgcttatatctcttgctgattacgtgcagctttcccttcaggcggtattcatacagcgg                                      >  1:96577‑M2/1‑41 (MQ=255)                                                                                                                                                                                                                  atacactaaatcagtacgttggcagcatcaccGACTCGTTGAACCACTTAACCTGACATTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGTAACCAATATAAGGCTCGGCAGAGAAGCGGTATTCAACGCCACCGCGTTTACTCAGGACTTCTTTACTGTAAATGCCAAACATAAACAGAACTGTACCACGttt                                       <  2:291779‑M1/218‑1 (MQ=255)                                                                                                                                                                                                                    tCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                                    <  1:71885‑M2/251‑213 (MQ=255)                                                                                                                                                                                                                           ggataatGAAGCAAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatc                             >  2:97902‑M2/4‑32 (MQ=255)                                                                                                                                                                                                                             gTAATGAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccg                           <  1:214606‑M2/251‑222 (MQ=255)                                                                                                                                                                                                                                  gAAGCCAAAACCTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatc                      >  1:324394‑M2/1‑25 (MQ=255)                                                                                                                                                                                                                                        cagcatcaccGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATa                >  1:239188‑M1/11‑251 (MQ=255)                                                                                                                                                                                                                                        aaaaACTTTAGACTCGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtacagctttcccttcaggcgggtttcatacagcggccagccatcacttatccctcac                <  2:79547‑M2/251‑233 (MQ=255)                                                                                                                                                                                                                                         aaaCCTATAGACTCGTTGgggaatgactccaacgtatggatagtgttttatgttcagataatgcccgatgacgttgtcatgcagctccaccgatgttgagaacgacagcgactgccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcatgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatca               >  1:298933‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                                      cGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatctcaccccgtcaaaggg  <  2:3740‑M2/251‑247 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       AAAAAGCCTCGCATTCGACGAGGCTTTATAGCGAGATTGAAGCGTATTCACACTTCAGATCAGTGGATTCGATCAGATAGCTGTTACGTTAACAGCTGCCGGACCTTTCTGGCCGTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATG  >  NC_000913/1907154‑1907649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.