| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,014,041 | (TACGGCGCAGCTGGACTTCGCCAGT)1→2 | coding (813/1659 nt) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2014015 = | 6 (0.210) | 28 (0.970) | 26/480 | 0.2 | 86.2% | coding (787/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein |
| ? | NC_000913 | = 2014039 | 3 (0.100) | coding (811/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein | |||||
GGTGCTCGCCTGCTGCTGGCGGTTATTTTGATTTGCCGGAGGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2014251‑2014015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAACAGATGTCCGCCCTGATCCACCAGCGTGACGTTTCCCGGCGGCAGACCAGCAACGGCGCTGGAAACCAGATGCACAATGGCGCT < NC_000913/2014039‑2013793 GGTGCTCGCCTGCTGCTGGCGGGTATTTTGATTTGCCGGAGGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGGCCAGC < 2:157118/251‑1 GTTATTTTGATTTGCCGGAGGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTG > 1:172128/1‑250 TATTTTGATTTGCCGGAGGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAA < 1:64689/250‑1 ccggatgtcTGCTGAGTGGCGCGT‑ATTCCGCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAGCCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCTTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACg < 2:6387/242‑2 GGAGGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAGGTCCAGCTGCGCCGTAACCTGGGCGTGCATATTACCGTTACCA > 2:1520/1‑250 GGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAA < 1:106375/251‑1 GGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGACGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCAACGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGAGCCGAAACCTGGGCGTGAATATTACCGTTACCAACA > 1:177114/1‑250 CGTGCTGATTGGCGCGTTATTC‑GAAGGTGCCGGTTGATTAGACACCGCAACCGGTACGCAGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGACGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTCCTGGCGAAGGCAAGCTGCGCCGTAACTGGCGAAGTCCCGATGCGCCTTAACCTGGGCGGGAACATTACCGTTACCAACAAT > 2:342865/1‑250 GATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGTCAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCG < 2:118750/249‑1 GGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGG < 1:46155/250‑1 gccggtgtgTTCGACATCGCACCCGGTACGCCGCCCGGATAACCGGAACAGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACTAAGCGCCGCATGAGATGCATCACCGTTAGGGCGATACTGTTCGTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCAAGCTGCGCCTTAATCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGAGCGCTTCAATACGCCGCT < 2:150707/242‑1 ATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGCATATTACCGTTACCAACAATAGGCGACAGGAACGCTTCAATACGACGCTGAATACGG > 2:284488/1‑251 CCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATT < 1:309014/251‑1 cgccctgaaagCCGGAACCGCTTGTCTCGCTCTCATTAAGCTGGCGTGAACGATGCGCCGCATGATATTCATCTCCGTTAGGTCTATTCTGTTCTTCCGTTTGTTCTTTACTTGCGAAGTCCAGCTGCTCCGTAACTGGTGAAGTCAAGCGGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGTCATGATCGCTTCAATACGCCGCTGAATACGTCCTTCGACATCGCTGGCATATTT < 2:340313/240‑1 CGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAAC > 1:203696/1‑251 CGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAAC > 1:302178/1‑251 AACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCAGATGTCAACTGAGC > 1:75185/1‑251 CGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCC < 1:330822/251‑1 ACGAAGCGCCGCATGAGCATCATCACCGTTAGTGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGTCGGGAATATTACCGTTACCAACAATAGGCGACAGGATCGATTCAATACGCCGCTGAATAAGGACTTCGACATCGCTGGCATATTTCAACTGAGCGGCATTAAGGTCGCGCCCGCTGGTATTGGCCTGGGTTAA > 2:322630/1‑250 GAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAA < 2:249227/172‑1 GAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAA > 1:249227/1‑172 GCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCGGTTTGTTATTTACTGGCTAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGCATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGACTACGGCCTTCGACATCGCTGGCATATTTCACCTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAACAGCTGTCagc > 1:38698/1‑248 CATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAACAGATGTCCGCC < 1:126308/251‑1 ACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAACAGATGTCCGCCCTGATCCACCAGC < 1:1520/251‑1 GTTCTTCCGTTTGTCCTTTACTGGCGAAGTCCAGCTGCGCCGTAACTGGCGAAGTCCCGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTATCAACAATAGGCGACAGGATCGCTTCAATACTCCGCTGAATACGGCCTTCGACATCGCTGGCATAGTGCAACTGAGCGTCAATAAGATCGCGCCCGCTGGTATTGGTCTGGGTTAACAGATGTCCGCCCTGATCCACCAGCGTTACGTTTCCCGG < 2:246417/248‑1 ACTGGCGAAGTCCAGCGTCTCCGTAACTGGCGAAGGCCAGCAGCGCCGTAACCTGGGCGTGAAAATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCCCCCGCTGGTATTGGTCTGGGTTAACAGATGTCCGCCCTGATCCACCAGCGTGACGTTTCCCGGCGGCAGACCAGCAACGGCGCTG < 2:282536/251‑1 GCCGTAACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAACAGATGTCCGCCCTGATCCACCAGCGTGACGTTTCCCGGCGGCAGACCAGCAACGGCGCTGGAAACCAGATGCACAATGG < 1:297998/251‑1 AACTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAAAAGATGTCCGCCCTGATCCACCAGCGTGACGTTTCCCGGCGGCAGACCAGCAACGGCGCTGGAAAACAGCTGCACAATGGCGCT > 1:43424/1‑250 GGTGCTCGCCTGCTGCTGGCGGTTATTTTGATTTGCCGGAGGCGTGCTGATTGGCGCGTTATTC‑GCAGGTGCCGGTTGATTCGACAACGCCCCCGGTACGCCGCCCGGATAACCGGAACCGCTTTGCTCGCTCTCATTAAGCTGGCGTGAACGAAGCGCCGCATGAGATTCATCACCGTTAGGGCGATACTGTTCTTCCGTTTGTTCTTTACTGGCGAAGTCCAGCTGCGCCGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2014251‑2014015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acTGGCGAAGTCCAGCTGCGCCGTAACCTGGGCGTGAATATTACCGTTACCAACAATAGGCGACAGGATCGCTTCAATACGCCGCTGAATACGGCCTTCGACATCGCTGGCATATTTCAACTGAGCGTCATTAAGATCGCGCCCGCTGGTATTGGACTGGGTTAACAGATGTCCGCCCTGATCCACCAGCGTGACGTTTCCCGGCGGCAGACCAGCAACGGCGCTGGAAACCAGATGCACAATGGCGCT < NC_000913/2014039‑2013793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |