| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,363 | 0 | C | . | 87.5% | 49.1 / ‑1.1 | 16 | intergenic (‑490/+919) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (11/3); total (12/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 2,173,364 | 0 | C | . | 93.8% | 54.2 / ‑1.9 | 16 | intergenic (‑491/+918) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base . (12/3); total (12/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
CCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACC > NC_000913/2173130‑2173561 || ccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAACCGATGGAGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAAAAGCAATTAAAATGGTGAG‑AGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTCTGTCCCagcagc > 2:347720/1‑251 (MQ=255) cAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATc > 1:123233/1‑251 (MQ=255) aTAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATccg > 1:90310/1‑249 (MQ=255) ccaaaGGGTGAGGCTCAAAATGATGCAACCCGAGATTAAGGGGCGGAACAGATTCCCACGTTGCAGGGCGCCCGCCACCGCAACAAAGAAGCCGAGGGGGGAAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGAAATTAAAAGGGTGAG‑TGGGATAAAAACCAGGCTTGCCGATCCCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCTGACCGCCGa < 1:42265/247‑1 (MQ=255) cacaGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGCCCGCCGa > 1:232691/1‑250 (MQ=255) acaGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTACGGAACAGCTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGAGGCAAGATCGCCCAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCAGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCAGGCTCAAGGCCAATCAGGAACTcccaacacccgcac > 2:140039/1‑239 (MQ=255) gaggaccccggagtttagggggcgaaaCAGATTCCCCCGATGCACGGCGCCCGCCATCGCCACGAAAAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTAc < 1:58314/226‑1 (MQ=255) aaCAGATTGCCACGATGCAAGGCGACCGCCATCGCCACGAAGAAGCCGTTGTTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGACCACGAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCAAGCAGCAACGCAGGATCAAGGCCAATCGGGAACTCATGACAGCCGAACTTCGCCTGTAAACGCCTACAAGACTGCTTACCGACGGGCGtac > 2:265641/1‑248 (MQ=255) cGGCGACCGCCATCGACACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCACTTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGCACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGCTGGGCGTTAAACCATCCATGATGGGttt > 1:218420/1‑250 (MQ=255) ggCCGATGGTGGCAAGACCGCCAAACGGCTGCATAGTAGTCCCCGCCACACAAACAG‑AAATAAAAAGGTGGGGTGGTAAAAAAATCGGTCTTGCCG‑TACC‑CCCCGCCGTATGTCCCAGCAGCACCGCCGGATCAATGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATc < 2:325339/250‑1 (MQ=255) cAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCa > 2:325526/1‑210 (MQ=255) cTGATTACCCGGCAAACAAACAGCAATTAAAATGGAGAG‑TGGGATAAAAATCAGGCTTGCCGATAC‑ACCC‑AACGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAACGCCGAACTTCGCCTGCAAACGACTACGAGACTTCTTAGCGATGGACATTAAACCATCCATGATGGCTTTAATAACACGTGGCATTAGCATCCTCACTGCCGCCGTGTTTACCGCCACCTGCAATacac > 2:321451/1‑251 (MQ=255) aTTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATAAGGCTTGCCGATACCACA‑‑GCCGTATGTCCCAACAGCAACGCCGGAGCAAGGCCAATCAGGAACTCCTGACCGCCTAACTTCGCCTGTAAACTACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTAGCATTACCAGCATCGCTCCCGCCGTTTTTACCACCAGCTACAATACACCtt > 1:185666/1‑251 (MQ=255) acacaAACAGCGATTAAAATGGTGAG‑TGGGATAACAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCACCGACGGATCAAAGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACTACTACGAACCTGCTTAGCGATGAGCGTTGAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCACCTGCACTACACCttatccatcgt > 2:296054/1‑241 (MQ=255) acacaAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGt > 1:229249/1‑250 (MQ=255) aaacaagaaataaaaaTGGAGGG‑TGGGAAAAAAACCAGGTTCGCCGATCCCACC‑‑GCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTACTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAAcc < 1:203762/239‑1 (MQ=255) || CCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAG‑TGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACC > NC_000913/2173130‑2173561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |