| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,311,002 | 2 bp→GT | intergenic (‑22/+104) | alsA ← / ← alsB | D‑allose ABC transporter ATP binding subunit/D‑allose ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,311,002 | 0 | T | G | 96.5% | 75.1 / ‑4.4 | 29 | intergenic (‑22/+105) | alsA/alsB | D‑allose ABC transporter ATP binding subunit/D‑allose ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (18/10); total (19/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.37e-01 | |||||||||||
| * | NC_000913 | 4,311,003 | 0 | A | T | 89.7% | 75.3 / ‑2.5 | 29 | intergenic (‑23/+104) | alsA/alsB | D‑allose ABC transporter ATP binding subunit/D‑allose ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base A (3/0); new base T (16/10); total (19/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAATATCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAGACCCGTTGCGCCGATATCCGCCGGGTTCTGGGCAAC > NC_000913/4310779‑4311241 || tAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGCAAGATCGTATTATTGCCTGATGGCTACAtt > 1:223749/1‑251 (MQ=255) taatggtactggTGACTTTGGACGGCTCATGTATTCCGGATAAAACTATCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTCGTAATGCATGTATTTCACCAGGATTAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCAGACCCCCGCCATCGATATATATAGCGTGGCCATAAATAACCTCTCTGCCCGAACGTTCGGATTATTGCCTGCTCGCTACATTTATccagtt > 2:423880/1‑246 (MQ=255) atggtaatggtGCCTTTGGTCGTCCCATGTATTCCGGATAAACCTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGCAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTATTGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATTTATATGGCGTGGCCATAAATAACCTCTCTGCACGACAGTTCGTATTATTACCTGTAGGCTTCATTTATCAGGTCtt > 2:186032/1‑250 (MQ=255) gtaatggtGCATTTGGTCGGCTCATGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCATAGTAATGCATGTATTTCACCAGGCTAAACCGTTCAATTAACCGACTTTAATGCGTGAACCGGACCAACGGACTTGCCGATCCCCGCCATCGATATATATAGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGAAGTCTAACTTTATCAGGTCtccat > 2:150257/1‑247 (MQ=255) taatggtGCCTTTGGTCGGCTCATGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAATATCGTATTATTGcc > 1:169361/1‑223 (MQ=255) ccTTTGGTCGGCTCATGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTAt > 1:172191/1‑251 (MQ=255) ggCTCAGGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGAATTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGACATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGCAAGATCGTATTATTGCCTGATGGCTACATTTATCCGGTCTACGTTCAGGTTATTTTGTTggg > 2:393175/1‑250 (MQ=255) ccGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGaca < 1:312289/250‑1 (MQ=255) gCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCCGGTCTACGTTCCGGTTATTTTGTTGGCCGGATAAGACCCTTCATTAGCATCATCATcc > 2:394606/1‑251 (MQ=255) cGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGAACCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACTTTCAGGTTATTTTGTTGGCCGGGTAAGACACTTCATTAGcatcctcatacg > 2:5920/1‑248 (MQ=255) tACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGtatcttt > 2:218241/1‑248 (MQ=255) ccGCGCCATTTTCTCCTAGTAATGCATGTAGTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTTGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCAGCATCCGGCATCATTCAg < 1:360830/251‑1 (MQ=255) aGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGAcc > 1:29244/1‑249 (MQ=255) aGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCa < 1:393175/250‑1 (MQ=255) cATGTATTTCACCAGGATAAACCGTTAACTTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGa > 1:141543/1‑250 (MQ=255) aTGTATTTCACCAGGATAAACCGTTAACTTAACCGCCTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAAt > 1:124867/1‑251 (MQ=255) gATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAAt < 1:218241/251‑1 (MQ=255) ccGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGc < 1:244370/251‑1 (MQ=255) cGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCg < 1:200228/251‑1 (MQ=255) tAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATa > 1:442905/1‑250 (MQ=255) aCCGGACAAAAGGACTTGCCGATCCACGCCATCGATATATATGGCATCCCCATAAATAACATCTCTGCCCGCCAGTTCATATTATTACCTGATGCCTACATTAAACAGGTCTCCGTTCAGGTTCTTTTGTTAGCCGGATAAGAAACTTCCTTAGCATCATCATACGGCATCATTCAGTTTTATTGAGTGACCAGGATAGACACAACCAGTTTACATTCAGGTGCTTTAACCTGCGGGATAACCTTggagg > 2:394998/1‑246 (MQ=255) aaGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATTATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGc < 1:5920/251‑1 (MQ=255) aGGATTTGCCGATTCCCGCCTGCGATATAAATGGCGTGGCCATAAATAACCTCTCTGCTCGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGTCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATGCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGCTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGACGGATTTCTCAGCg < 2:330750/251‑1 (MQ=255) gCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTc > 1:324824/1‑249 (MQ=255) atatatGGCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAGACCCGTTgc < 1:150233/251‑1 (MQ=255) ggCGTGGCCATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAGACCCGTTGCGCCGat > 1:135919/1‑251 (MQ=255) ccATAAATAACCTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAGACCCGTTGCGCCGATATccgcc < 1:394606/251‑1 (MQ=255) ccTCTCTGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAGACCCGTTGCGCCGATATCCGCCGGGTTCTggg > 1:33455/1‑251 (MQ=255) tGCACGAAAGTTCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATACGACACTTCATTAGCATCATCATCCGTCCTCATTCAGTTTTCTTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGTTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCATCATCCACCTTCAGCTTCAGCCCCGTTGCGCCGATCTCCGACGGGGTCCGGGCacc > 2:327844/1‑247 (MQ=255) || TAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCGGATAAAACTTTCATTAGCGTGGATTTACCCGCGCCATTTTCTCCTAGTAATGCATGTATTTCACCAGGATAAACCGTTAAATTAACCGACTTTAATGCGTGAACCGGACCAAAGGACTTGCCGATCCCCGCCATCGATATATATGGCGTGGCCATAAATAACCTCTCTGCACGAAATATCGTATTATTGCCTGATGGCTACATTTATCAGGTCTACGTTCAGGTTATTTTGTTGGCCGGATAAGACACTTCATTAGCATCATCATCCGGCATCATTCAGTTTTATTGAGTGACCAGGATTGAATCGACCAGTTTAAATTCCGGTGCTTTATCCAGCGGGATAACCTTGCCGGATTTCTCAGCGTCAACCATCAGCTTCAGACCCGTTGCGCCGATATCCGCCGGGTTCTGGGCAAC > NC_000913/4310779‑4311241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |