| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 147,213 | 2 bp→TT | coding (246‑247/903 nt) | rpnC → | recombination‑promoting nuclease RpnC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 147,213 | 0 | C | T | 83.9% | 68.9 / 8.1 | 32 | H82H (CAC→CAT) | rpnC | recombination‑promoting nuclease RpnC |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (9/17); total (12/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.48e-01 | |||||||||||
| * | NC_000913 | 147,214 | 0 | C | T | 84.4% | 65.1 / 7.3 | 32 | Q83* (CAA→TAA) | rpnC | recombination‑promoting nuclease RpnC |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (9/18); total (12/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.92e-01 | |||||||||||
GGATGCACCGAGTACCACACCGCATGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCA > NC_000913/146970‑147445 || ggatgCACCGAGTAACACACCGCATGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAaagca < 2:102242/251‑1 (MQ=255) atgCACCGAGTACCACACCGCATGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAaagcaag < 2:133713/251‑1 (MQ=255) ccACACCGCATGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGaaa < 1:383911/251‑1 (MQ=255) acCGCTTGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACGTTCTGGAGATACATTTTCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCGTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCAGTTAACTTCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATgg < 2:211285/251‑1 (MQ=255) aaTGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCCAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAgccg > 1:317655/1‑251 (MQ=255) aaTGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAgccg > 1:249887/1‑251 (MQ=255) gcatgcGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCa < 2:81209/251‑1 (MQ=255) atgcGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGAAACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATg > 1:46890/1‑251 (MQ=255) ggAGACGGCTCGCGAATTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCAcc < 2:231210/251‑1 (MQ=255) gACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGc < 1:296166/251‑1 (MQ=255) ttCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTg < 1:300383/249‑1 (MQ=255) ggAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCAc < 1:26563/250‑1 (MQ=255) gAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTTAAGAGAGACTGAAAGGACACAACACGGAAGTGCTCTATTCCGGGCAAAAGCCGGGCCAACCCGGTTATCTGCATGTTGTGATTGAACATTAAAGACAGCCGGATAAGAAAATGGCCTTTCGCTTGATGCGTTATTATAAAACCCCCATGCACCGGCATCTGGAGGCTgccaccgatgaggcgccgcaggtggg > 2:437793/1‑226 (MQ=255) aCGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCg > 1:387580/1‑250 (MQ=255) cTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGGTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGTAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGtt > 1:115179/1‑251 (MQ=255) cAACACGCTTCATTTAGAGTCTGGGAGTTTCATTGAAGAGATCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCGGCATGTTGTGATTTAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCg < 1:313302/251‑1 (MQ=255) cAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCg < 1:17222/251‑1 (MQ=255) aTTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCAGTGCAAATGCAGGGCCATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGATGGCCACGGTAAGCTGCCGCAGGTGGTGCCGCAACTGTTTTATCAGGGCGAGGCcaccccc > 2:129510/1‑247 (MQ=255) tAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCAGCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACCCCTTa < 1:268420/250‑1 (MQ=255) agagCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGat < 1:5755/251‑1 (MQ=255) gACACAGCACGAACGTGCTCTATTACGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGCACATTAAAGCAAGCCGGATAAGAAAAAGGCCTTTAGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGTCAACGCTAAACTTCCTCTGGTGGGGCCGATACTGTTTTATCAGGGCTAGTCCCCACCTTATCCGGTATCCAT‑TGTATGGTTTGTTATGTTTTCCTCg > 2:118681/1‑251 (MQ=255) ataaggtcGTGCTCTATTACGTGCAAATTAAGGTCATTCCCGGTTTACTGCATGGTTTGATTGAACATTAAAGCACTCCGGATAGGAAAATTGCAATTCGCAGGATGAGTGAGTCAATAGCCGCCATGCACCGTCCTCGGGAGGCTGACTACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTGTATCAGGGCGAGGCCACACTTTATCCGCTATCAATTTG‑CTGGTTTGATATGTTTTACTCGCCGGAg < 2:96152/244‑1 (MQ=255) cGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTg < 1:129510/251‑1 (MQ=255) cGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGTTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCTGATAAGAAAATGGCCTTTCGCATTATGCGTTATTCTATAGCCGCCATGCTCCGGCATCTGGAGTCTTACCACGATAATCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGGCACACCTTATCCGCTATCAATGTG‑CTGGtt < 1:411912/222‑1 (MQ=255) cGTGCTCTATCCCGTCCAAATGCAGGACAATCCCGGTTCTCTGCATGTTGTGATTGAACACCACAGCAAGCCGGATAAGAAAATGGCCTTTCGCCTGATGCGTTATTCTATAGCCGCAATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGCTACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGtt > 2:411912/1‑222 (MQ=255) gggCTCTATTCCGTGCAAATGCAGGGCAATTCCGGTTATCTGCAGCTTGGGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTGCGCATGATGGGTTATTCTATAGCCGCCATGCACCTGCAGCTTGAGGCTGACCACGATATGCTGCCGCTGGTTGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCTCCGGAGCTGGcgcg < 2:374816/249‑1 (MQ=255) gTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGcgcg > 1:312744/1‑251 (MQ=255) aTTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTc < 1:266391/251‑1 (MQ=255) cccctacactacgctcgtccgatcGGTTATCTGCATGTTTGGATGGAACAGTAAAGCAAGCCGGATAAAAAAATGGCTTTTCTCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACGACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGTGAGGCCACGCCTTATCCGCTATCAATGTG‑CTGGTTGGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCt < 2:220779/227‑1 (MQ=255) gTTATCTGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCt > 1:220779/1‑225 (MQ=255) tGCATGTTGTGATTGAACATTAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGAGTTATTCTATAGCCGACATGCACCGGCATCTGGAGACTGACCACGATAAGCTGCCGCTGGTGGTGCCGATAATGTTTTATCAGGGCGAGGCAACAAATTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCAcc > 1:49471/1‑251 (MQ=255) gCATGTTGTGATTAAACATTAAAGCAAGCGGGATAAGAAAAGGGCCTGTCGCATGATGCGTTATGCTAGAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAATCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCa < 2:432929/251‑1 (MQ=255) || GGATGCACCGAGTACCACACCGCATGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGGAGGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATACTGTTTTATCAGGGCGAGGCCACACCTTATCCGCTATCAATGTG‑CTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACCA > NC_000913/146970‑147445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |