| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,486,205 | 0 | C | A | 95.0% | 48.6 / ‑4.7 | 20 | T29K (ACG→AAG) | crp | DNA‑binding transcriptional dual regulator CRP |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (8/11); total (8/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 | |||||||||||
TACAGTAATACATTGATGTACTGCATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAA‑CTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTA > NC_000913/3485958‑3486446 | tACAGTAATACATTGATGTACTGCATGTATGCAAAGGACGTCACATTAAAGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCCCATTCATAAGTACCCATCCAAGAGCAAGCt > 1:146356/1‑251 (MQ=255) atgaaCTGCATGTATGCAAAGGATGGCACATTCCCGGGCAGTACAGGTGATAGCCCCTGCCCAGGTAGCGGGAAGCATATGTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGa < 2:140134/247‑1 (MQ=255) agttgtcaGCCCTTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGATACAGCGGCGTTATCTGGCTCTGGAGAAAGCTGATAACAGAGTATAACCGCGCAGGTTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAg < 2:432404/244‑1 (MQ=255) ttGATAGCACCTTCCCAGGAAGAGGGAAGCATATTTCAGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGAATGGTGCTTGGCAAACCGAAAACAGACACGACTCTCGAATGGTTCTAGGCTCATTGCCACATTAATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGGAAAAGAGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGAAGTg > 2:317740/1‑251 (MQ=255) agtgcctccctctaggtgtggggAAGCATATTTGGGAAATGCAGAGACAGGGGAGTTACCTGACACGGGAGAAAGTTTATAACATATGATCACCGCTCATGGTTCTTTGCAAACCTAAAACAGACCTGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAATAGCAAGCTTTTTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACTTCGTTAAAGGCTCTGTGGCAGTGCTg < 2:146356/231‑1 (MQ=255) ccTTCCCAGGTAGAGGGAAGCATATTTCGTCAATACAGCGACCGCAGCGTTATCTGGCTATGGAGAAAGCTTATAACAGAGGATAACCGCACATGGTGCTTGGCAAACAGCAAACAGAACCGACTATCGAATGGTTCTTGTCTCATTGCCACAATAATAAGTAACCCTCCAAGAGCAAGCTTATTCACAGGGGAGAAAAAGCGGCCACGCTGAACAACATCGGTAACGGCTAGGGGGCAGGGCTGATCaa > 2:396871/1‑250 (MQ=255) gTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCTTTATCTGGCTCTGGAGAAATCTTATAACAGAGGATACCCGCGCATGTTTCTTGGCAACCCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACTCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAagag < 1:47367/251‑1 (MQ=255) ggggAAGCATATTTCGGCAATCCAGAGACAGCGTCGTTATCGGGCTATGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGTGTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACTAAGAGGGTa < 2:257901/250‑1 (MQ=255) agcttatgtCGGCAACCCAGAGACAGCGGCGTTAGCTGGCTCGGGAGAAAGCTTAAAACAGAGGATAACCGCTCATGGTTCTTGTCAAACCGCAAACATACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGaa < 2:397750/243‑1 (MQ=255) ttttCGTCAATCCAGAGACAGAGGCGTTAGCTGGCTTTGGAAAAAGCTTATAACAGAGGATACCCGCGCATGGGGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTTCCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGa < 2:148695/249‑1 (MQ=255) acatcggcgTTCTCGGGCTCTGGAGAAAGTGTAAAATAGGGGATAACCGGGTATGGTGCTTGGCAAACCGCAAACAGCGCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACAGCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGaagc < 2:104163/247‑3 (MQ=255) agagGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGCATCAGGGTGATTTTTTTGGCGCA‑CTGGGTCTGTTTGa > 2:88102/1‑248 (MQ=255) ggTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGCTCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAA‑CTGGGCCTGATTGAAGAGGGACAGGAACGAAgcg > 2:455427/1‑251 (MQ=255) tGCTTGGCAAACCGCAACCAGACCCGACTCTCGAATGGTTATTGTCTCATTGCCACATTCATAAGTACCAATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAATCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTACTATCTGACTCAGGGTGATTTTATTGGCGAA‑ATGGGCCTGTTTGCAGAGGGcagggacagtggcgcc > 1:423873/1‑236 (MQ=255) gCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAA‑CTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGt > 1:447083/1‑250 (MQ=255) cGCAACCAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAA‑CTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCg < 1:233183/251‑1 (MQ=255) aaacagcaccaaCTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGGAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGAGTTTATTGGCGAA‑CTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGaaa < 2:355029/240‑1 (MQ=255) cTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAAGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAA‑CTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAAttt > 1:82226/1‑251 (MQ=255) ttGTCTAATTGCCACATTCATAAGTCCCCACCAAAGAGCAACTTTATTCACCAGGGTGAAAAATCGGAAACGCTGTATAACAGTGTTAAAGGCTTTGTGGCAGTGCTAATAAAAGACAAAGAGGGAAAAAAAATGTTCCCCCCCTACCTGAATCAGGTTGATTTTATTGCCGAA‑CTGGGCCTGTTTGAAGAGGCCAAGGAACGTGGCCCTTGGGTACTTGCGAAAACCGCCTGTGAAGTGGCTGAAAttt < 1:332670/250‑1 (MQ=255) ccAAGAGCAAGTTTATCCACCAGGGTAAAAAGGGGGAACCGCTGTACTACTTCTTTAAAGGCTGTGTGGAATTGCTGATCAAAGAGGAAGAGGTTAAAAAAGTGTCCCTCTCTTACCTGAAGCGGGGTTATTTAATTGG‑GAATCGGGTCCTTTTATAAGGGGGCCAGGTGCGTGGGGCAGGGTTACGGCCGAAAACCTCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTa < 1:184241/251‑1 (MQ=255) | TACAGTAATACATTGATGTACTGCATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAA‑CTGGGCCTGTTTGAAGAGGGCCAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGATTCAGGTA > NC_000913/3485958‑3486446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |