| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,039,555 | A→G | L26L (TTA→TTG) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,039,555 | 0 | A | G | 83.3% | 58.1 / 1.1 | 31 | L26L (TTA→TTG) | msrP | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| Reads supporting (aligned to +/- strand): ref base A (3/2); new base G (16/9); total (20/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 | |||||||||||
GCCTTTATTACTTAGCCAATATGGGTATTCAACCTATCGTGGCAGTTAATGCATAAATATGTAAAAGCAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTAAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTCTATGAATTCGGGCTGGATAAAGCCGATCCCGCCGCTAATGCTGGT > NC_000913/2039321‑2039792 | gCCTTTATTACTTAGCCAATATGGGTATTCAACCTATCGTGGCAGTTAATGCATAAATATGTAAAAGCAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATc < 1:393529/250‑1 (MQ=255) ttattaCTTAGCCAATATGGGTATTCACCCTATCGTGGCAGTTAATGCATAAATATGTAAAAGCAGATCTCTGCTACTGTTAGGGAGGACCATCCCTGCCAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGACAAAGAATCAATTTTTAAAAGACTCAAATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGCAATCACTGGGCCTCAGTGc > 1:418095/1‑251 (MQ=255) gcaaaTATGGGTATTCAACCTATCGTGGCAGTTAATGCATAAATATGTAAAAGCAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCActt < 2:12822/248‑1 (MQ=255) atGGGTATTCAACCAATCGTGGCAGTTAATGCATAAATATGTAAAAGCAGATATCTGCTACTGTTAGGGAGGAAACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGACGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCActttctttt > 1:186039/1‑250 (MQ=255) catGGCAGTTAATGCATAAATATGTAAAAGGAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCATGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAGTCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATg < 1:100676/248‑1 (MQ=255) ttatGTACAAGCAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTACTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGGTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCCCATGCCGACATGCTTAGCTGtttt > 2:96037/2‑251 (MQ=255) tatGTAAAAGCAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGttt > 1:20064/1‑250 (MQ=255) tctGCTACTGTTAGGGAGGACACTCTCTGACAGATTAACAGTAAACGGATCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTAAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCCGCGCATGCCGATCTGCTTTGCTGGTTTAAATGGacagaccgccc > 2:159641/1‑241 (MQ=255) tctGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGCTCTGCTTAGCTGGTTTAAAGGGAACGATcgccc > 1:287668/1‑251 (MQ=255) tAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGcccgccccc < 1:115633/250‑1 (MQ=255) cAGATTAACAGTAAACGGCCCTTGCTGGCTAACGACAAAACAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATAAGATGTTACGGCCGAGTCGGTATTCTTTATGGAGCGTCGGCAGGTGTTAAAAGCACTGGGCATCCGGGAAAATGCACTTTCTTTGCCTAACGCTGCGCATGAGGAACTAGTTCGCAGGTTTAAAGGGGAAGATCGCCCGCCCGACCCCGCCGGCAAAGCGGTGGAgg > 2:289863/1‑249 (MQ=255) aaCAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTAAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCaa < 1:159641/251‑1 (MQ=255) aCAGTAAACGTCTCTGGCTGGCTAACGACAAAAAAGTGTGAGGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATGTTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACGGCACTTTCTTTGCCTCACGCTGCGCAGGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccgcccg < 2:382986/219‑1 (MQ=255) aCAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCCGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccgcccg > 1:382986/1‑219 (MQ=255) aGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc > 1:449693/1‑251 (MQ=255) acacgactctcttccgtcataaaaTTGTGATGGCTTATGAAAAAGAACTAATTTTAAAAAGAATCAGATTTTACGGCTGAGCCGGTATTCTTTATGAAGCTTCGTCAGGTGTTGAAAGCACTGGGCATCAGTGCAACGGCTCTTTCTTTGCCTCACGCTGCGCATGCCGTTCTGCTTAGCTGGTTTAAAGGGAACGATCCCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgccgcatg < 2:420683/231‑4 (MQ=255) ggCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaaaa < 1:65535/249‑1 (MQ=255) acaaaaacatgggATGGCTTATGAAAAAGAATCAATTTTTAAACGAATCAGATGTTACGGCCGAGTCGGTATTATTTATAAAGCGACGGAAGGTTTTGAAAGCACTGGTCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCCAGACGATCTGCTTAGCTGGATTACAAGGAACGAACGCACGCCCCCCCCCGACGCAGAAACGTTTGAGTTCAGCACGCCTGCCGCCTGGCCCAATAACCTGcc > 2:442259/13‑250 (MQ=255) cAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGCGTCGGTATTCATTATGAAACATCGTCAGGAGTTAAAAGAACTGGGACTAAGTGCAACGGCACTTTCTTAGCCTAACGCTGAGCATGCCGATCTGATTAACTGGTTTAATGGGTAATATCGCCCGCACGCCCCCGCCGGATAAGCGATGGAGTTCAGAAAGCCTGTCTCCTGGCaaacaaccctgccgc > 2:316301/1‑239 (MQ=255) aaaagaggtgtGAGGGGTTAGGAAAAAAAATCAATTTTAAAAAAACGTAGATGTTGCGGCCTGGTGGTTATTCTTTATGGGGCGTCGGCGGGTTTGGAATGCATTGGCCATCGGGGCATCGGCGCTTTCTTGGCCTCCCGCGGCGCATGCCGAGCTGTTTAGGTGTTTTAAAGGGAAAGATCCCCCGCCCGCCCCCGCCGGAAAATCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCAc < 2:335108/244‑1 (MQ=255) aaaaGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg > 1:420683/1‑231 (MQ=255) tGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGATGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCACGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagc > 1:93818/1‑248 (MQ=255) aaaTCAATTTTAAAAAGAAGCAGATGTTCCGGCCGAGTGGGTATTCTTTATGAAGCGTCGGCGGGTGTGAAAAGCCCTGGGCAGCAGGGAACCTGCACTTTCTTTGCCTCCCGCTGCGCATGCCGATCTGCTTAGCGGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGtt < 1:291544/250‑1 (MQ=255) actttttAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCCTCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTAAGCCAGCCTGCCCCCTGGCAAAATAACCTGCCCCTGACCCCAGCAGATAAAGTTTCCGGTTttaa > 2:137057/3‑250 (MQ=255) tttttAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCGGGCGTTGAAAGCACTGGGCATCAGTGAAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGCTCTGCTTAGCTGGTTTAAAGGGAACGATCGCACGCCCGCCCCCGCCGGAAAAGCGCTGGCGTTCAGCAAGCATGCCGCCTGGCAAAATAACCTGCCACTGCCGCCAGCAGTTCACGCTTCCAGTTataata > 1:286449/1‑250 (MQ=255) tAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGGGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTCGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCCGCAGCAAAAACTTCCGGTTAtaataaatac > 1:75468/1‑247 (MQ=255) aaaaGTATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAAAGTCGGCTGGTGTTTCAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTATATGGAACGATCCCCCGCCCGACCCCGCCGGCACAGCGCTGGAGTTCAGCAAACCTGCCGCCTGGCAAAATAACCTGACACTGACGCCCGCAGATCAAGTTTCCGTTTATAATAACTTCt > 2:74571/1‑251 (MQ=255) aaaGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGACAGCAGATAAAGTTTCCGGTTATAATAACTTCt > 2:312135/1‑250 (MQ=255) ggttATTCTTTATGATGCGTCGGCAGGTGTTGAAACCACGGGGCTTCGTTCCACCTGCACTTCCTTCGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGACCAACCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTCTATGAATTCGGGCTGGATAAAGCCGAt < 1:135490/248‑1 (MQ=255) ttCTTTATGAAGCGTCGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCCTGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCAACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTCTATGAATTCGGGCTGGATAAAGCCGCTCccgc > 1:153755/1‑251 (MQ=255) cGGCAGGTGTTGAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGATATAATAACTTCTATGAATTAGGGCTGAATAAAGCCGATCCCGCCGCTAATGCTgga > 1:348913/1‑248 (MQ=255) | GCCTTTATTACTTAGCCAATATGGGTATTCAACCTATCGTGGCAGTTAATGCATAAATATGTAAAAGCAGATCTCTGCTACTGTTAGGGAGGACACTCCCTGACAGATTAACAGTAAACGGCTCTTGCTGGCTAACGACAAAAAAGTGTGATGGCTTATGAAAAAGAATCAATTTTTAAAAGAATCAGATGTTACGGCCGAGTCGGTATTCTTTATGAAGCGTCGGCAGGTGTTAAAAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTCTATGAATTCGGGCTGGATAAAGCCGATCCCGCCGCTAATGCTGGT > NC_000913/2039321‑2039792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |