New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 382590	NA (NA)	28 (0.770)	25/488	0.4	90.3%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 480923	3 (0.080)					intergenic (‑215/+331)	tomB/acrB	Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB

ACGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCT  >  NC_000913/480710‑481168                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                      aCGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGa                                                                                                                                                                                                                  <  1:202853/251‑1 (MQ=255)     gTCCCCTTCTTAGCTGTTGAATTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCGTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTGCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaa                                                                                                                                                                                                              >  2:40205‑M2/1‑210 (MQ=255)               tagctgtttcactaacggcccCCTTTCGGGTTTGAAAAAACTTTCTGTCCTTGACTTGCCCTCTCGTTTTTTAGCTTAACTATAAGCCTCTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCTCTTTTTCATACTATCACTAACCCGCAGCATGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattaca                                                                                                                                                                                                     >  2:389480‑M2/11‑200 (MQ=255)                     ttGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAATCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGCTTGtggatttgcgcctatatttcaagacctctgttatcacttaacccattacaagcccgc                                                                                                                                                                                              <  2:338268‑M2/251‑58 (MQ=255)                       gAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCCCTTTTTCATACTAGCACTAACCCGCAGCAGGTACAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg                                                                                                                                                                                            <  1:61038‑M2/251‑60 (MQ=255)                        aaCTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCACTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagccatctgatatcacttaacccattacaagcccgctgc                                                                                                                                                                                           <  1:173104‑M2/251‑61 (MQ=255)                               ggACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTATGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCAATAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaaacccgatgccgc                                                                                                                                                                                        <  1:161215‑M2/247‑64 (MQ=255)                                 accccgttctggttggaaaaaacttacCGTCCTGGACTTGCCCTCTCTTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaatcccgctgccgcatatat                                                                                                                                                                                  >  2:313395‑M2/14‑182 (MQ=255)                                                gAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagctcgctgccgcagatatgcccgtggcgagcga                                                                                                                                                                   >  1:107777‑M2/1‑167 (MQ=255)                                                          aCTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGga                                                                                                                                                          >  1:184902/1‑250 (MQ=255)                                                                   gACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAg                                                                                                                                                <  2:184902/251‑1 (MQ=255)                                                                                      tAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGAAAGCGGGAAAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttacacctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccagtggcaagcgataacccagcgcactctgagaatgccattcgtcataagg                                                                                                                             <  2:334134‑M2/251‑123 (MQ=255)                                                                                             aCTATAAGCCACTCCTTGCAGGGGTGCATCGCAATATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGAATCACTTTCTCATACTAGCACTAACCCGCAGCAGGGAAAAGCAGTTTGtggatttgcccctatatttcctgacatctgttatcacttaacccattacaagcccgctgcagcatatattcccgttgcgagcgataacccagcgcactatgcggatgtcattcgtgacaattctcgaat                                                                                                                      >  2:444745‑M2/1‑122 (MQ=255)                                                                                                     ccACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgc                                                                                                              <  1:258326‑M2/251‑138 (MQ=255)                                                                                                            tggcaGGTTTTCATCGCATTATTACGAAAAATTACGATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacgtaacccattacaagcccgctgccgcagatatacccgtggcgagcgataacccagcgcactatgcggatgccattcgttataattctcgaacgcctctgcaagg                                                                                                          >  2:285199‑M2/3‑107 (MQ=255)                                                                                                                 ggTTTTCATCGCATTATTCCGAAAAATTACCATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgc                                                                                                  <  2:65445‑M2/251‑150 (MQ=255)                                                                                                                         tCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttcctgccgtt                                                                                           <  1:386103‑M2/250‑157 (MQ=255)                                                                                                                            cATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACCGGACTCTCTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaatcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgcttccgttaacc                                                                                       >  2:160693‑M2/1‑91 (MQ=255)                                                                                                                            cATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataaggctcgaacgcctctgcaaggttctttgctgccgttaacc                                                                                       >  1:376937‑M2/1‑91 (MQ=255)                                                                                                                                          aTTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggc                                                                         >  1:74872‑M2/1‑77 (MQ=255)                                                                                                                                                aTTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccaagcgcactatgcggatgacattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatt                                                                   <  2:219484‑M2/251‑181 (MQ=255)                                                                                                                                                    ggaaggaaGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaccccgtctggtttgggcatgatactg                                                                <  1:186370‑M2/250‑184 (MQ=255)                                                                                                                                                       aggaagCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgt                                                            >  1:334134‑M2/1‑64 (MQ=255)                                                                                                                                                        ggaagCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgt                                                            <  1:422575‑M2/250‑188 (MQ=255)                                                                                                                                                                gACAGGACTCACTTTTTCATACTAGCACTAACACGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgatgccgcagatattcccgtggcgagcgctaacccagcgcactatgcggatgccattcgttatactgctcgaacgcctctgcaaggttctttgcttccgttaacccgtctggtttaggcatgatactgatgtagtcacgct                                                   <  2:4760‑M2/251‑197 (MQ=255)                                                                                                                                                                   aGGACTCACGTTTTCATACTATCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagatatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccaagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgtcaacccgtctggtttgggcatgatactgatgtagtcacgcttta                                                >  1:360643‑M2/1‑52 (MQ=255)                                                                                                                                                                             tttcCATACTAGCACTATCCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaccccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttc                                        >  1:9991‑M2/1‑42 (MQ=255)                                                                                                                                                                                                         gTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc          <  1:81364‑M2/251‑238 (MQ=255)                                                                                                                                                                                                             tagCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggctagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgaaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgatgctctttgctattccgttctcttccggac      <  2:281721‑M2/250‑242 (MQ=255)                                                                                                                                                                                                              aGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgatcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtggtcacgctttatcgttttcacgaagctctctgctattccgttactccccggact     <  2:376414‑M2/251‑243 (MQ=255)                                                                                                                                                                                                                 aGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccg  >  1:65445‑M2/1‑6 (MQ=255)                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                      ACGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCT  >  NC_000913/480710‑481168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.