New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	44 (1.230)	43/480	0.0	100%	intergenic (+253/‑69)	ychE/insH21	MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

TTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCA  >  NC_000913/1299250‑1299744                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       tttCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAACAGCAAAAGGACTAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCTTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGTGGACAGTGATAAat                                                                                                                                                                                                                                                      >  2:329174‑M1/1‑249 (MQ=255)  ttCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATATGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCTCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGTTAGAGGAAAGTGCTAAa                                                                                                                                                                                                                                                       <  2:231974‑M1/249‑2 (MQ=255)     aaaTGAAAAGGAGCTTCCATGCTCTGTTTAACTCGTCATTATTTTTACTTTGTTCCCGCGCATTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                                                                                                                                                                                                                                  <  2:400417‑M1/251‑7 (MQ=255)      aaTGAAACGGATCTGCCATGTTCCGTTTACTACGTCATTAATTTTACGTTAATCCCGAGCAGTTATCAAAAGCAAAATGAATATGTAAAAATATTCTCCTCAAAGTACAGTTAGTTATAAGGATTTCCTTAATTGCTTCTCCTCACCATCATGTTATTTCCGCCAAATCATAATCCTTGGCTTGCGGAAGAATAATTTAAAAGAAATTATTAATTCCACTGCCTTTGGTAGAGGAGAGTGCTaaataatat                                                                                                                                                                                                                                                 <  2:193928/251‑8 (MQ=255)          aaaCGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatca                                                                                                                                                                                                                                              >  2:61759‑M1/1‑240 (MQ=255)           aaCGGAGCTGCCATGCTCCGTTTACTTCGTCATGATTTTTACTTTGTTCCCGAGCAGTTATCAAAATCAAACGGAATAGGTAAACATATTCTTCTCAAATTCCAGTTCGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGATTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGTAAAGTGCT‑Aatacataatcaat                                                                                                                                                                                                                                           >  2:368347‑M1/1‑238 (MQ=255)              ggAGCTGCCATGCTCCGTTTACTTCGTCATTCTTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGACTAGGTAAAACTATTCTTCTCACATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTCTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                                                                                                                                                                                                         >  2:173686‑M1/1‑236 (MQ=255)                                ttACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                                                                                                                                                                                                       >  1:100315‑M1/1‑218 (MQ=255)                                      cGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                                                                                                                                                                                                                 <  2:370319‑M1/251‑40 (MQ=255)                                             attTTTACTTTGTTCCCGCGTAGTTACCAAAAACAAAAGGAATAGGTAAAAATCTTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCGTCTCCTCACCATCATGTTATTTTAGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGATGAAAGTGTTAAataataatcaattgttaaattattgtgcatttcactactggaact                                                                                                                                                                                                           <  2:308245‑M1/250‑46 (MQ=255)                                                                 cAGTTATCAAAAGCAAAAGGCATAGGTAAACATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACAGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGTCTTGCTGAAGCATAATTGTAATGCTGTTATTAATTCCACGGCCTTTGGTATAGGAACGTGCAAAataataatcaattattaaattattgtgcatttaaatactggaactgtaaccagaaaagatagacat                                                                                                                                                                                      >  2:280799‑M1/1‑185 (MQ=255)                                                                  aGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                                                                                                                                     <  1:457009‑M1/251‑68 (MQ=255)                                                                  aGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                                                                                                                                     >  1:131959‑M1/1‑184 (MQ=255)                                                                     tATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgct                                                                                                                                                                                   <  1:374891‑M1/250‑70 (MQ=255)                                                                      aTCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                                                                                                                                  <  1:368347‑M1/250‑71 (MQ=255)                                                                                            aaaaaTATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTACTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                                                                                                                           >  1:67717‑M1/1‑158 (MQ=255)                                                                                                       tctcAAATTACAGTTATTTATAAGGATTTCCTTAACTGCTGCTCCTCACCATCATGTTATTTTCTCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATGAATTCCACTGCCTTTGGTAGAGGAAAGTGCTGAataataatcaat                                                                                                                                                                                                                                            <  2:193835‑M1/159‑13 (MQ=255)                                                                                                       tctcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCTCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaat                                                                                                                                                                                                                                            >  1:193835‑M1/1‑147 (MQ=255)                                                                                                          cAAATTACAGTGAGGTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                                                                                                                             <  2:36467‑M1/251‑108 (MQ=255)                                                                                                            aaTTACAGTTAGTTATAAGTATTTCCTTAACTGCTTCACCTCACCATCATGTTATTTTCGCCACATCATAATCTTTGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttatattattgtgcatttcactactggaactgtaatcagaaaatagagtcatgcttagcaaatctctatttgattgaattgaaagatgtttgtta                                                                                                                                           <  1:280998‑M1/251‑110 (MQ=255)                                                                                                               tACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaagg                                                                                                                                        >  1:280085‑M1/1‑139 (MQ=255)                                                                                                                aCAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCCCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                                                                                                                                                                                                                    >  2:436555‑M1/1‑138 (MQ=255)                                                                                                                aCAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                                                                                                                                                                                                                    <  1:436555‑M1/174‑37 (MQ=255)                                                                                                                      agttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                                                                                                                                 >  1:423600‑M1/1‑132 (MQ=255)                                                                                                                        ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgc                                                                                                                               >  1:306539‑M1/1‑130 (MQ=255)                                                                                                                                            gtttctCCACACAAGCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattcagatac                                                                                                            <  2:366375‑M1/248‑141 (MQ=255)                                                                                                                                                         atcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagag                                                                                              <  1:202565‑M1/251‑155 (MQ=255)                                                                                                                                                           catGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                                                                                                                                 <  1:444359‑M1/150‑56 (MQ=255)                                                                                                                                                           catGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                                                                                                                                 >  2:444359‑M1/1‑95 (MQ=255)                                                                                                                                                                tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgct                                                                                       >  1:208194‑M1/1‑90 (MQ=255)                                                                                                                                                                 aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgctt                                                                                      <  1:54633‑M1/251‑163 (MQ=255)                                                                                                                                                                                  aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatg                                                                     <  1:88479‑M1/251‑180 (MQ=255)                                                                                                                                                                                      tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgc                                                                                                                               >  1:365777‑M1/1‑68 (MQ=255)                                                                                                                                                                                      tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgc                                                                                                                               <  2:365777‑M1/189‑122 (MQ=255)                                                                                                                                                                                            tGCTGAATAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttacattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcg                                                             >  2:95205‑M1/1‑62 (MQ=255)                                                                                                                                                                                                   gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaac                                                    <  2:423600‑M1/251‑197 (MQ=255)                                                                                                                                                                                                      taatTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGAAAGTGCTAAataataataaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacacttttgcaaactgtattggcgagtaagaaccgc                                                 >  2:167624‑M1/1‑52 (MQ=255)                                                                                                                                                                                                            aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagaaaaaaccgcatttgg                                           >  2:38920‑M1/1‑46 (MQ=255)                                                                                                                                                                                                                gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtact                                       >  1:321307‑M1/1‑42 (MQ=255)                                                                                                                                                                                                                    ttattaATTCCACTGCCTTTGGTAGAGGAACGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaatatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaccaattttgcaaaatgtattggagcgtaagaacagcatttggtactttcc                                   >  2:307396‑M1/1‑38 (MQ=255)                                                                                                                                                                                                                     tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttcc                                   <  1:212479‑M1/250‑214 (MQ=255)                                                                                                                                                                                                                     tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttcc                                   <  1:103509‑M1/250‑214 (MQ=255)                                                                                                                                                                                                                                    cTTTGGTAAAGGAAAGTGCTAAataataatcaattgttaaattattatgcttttaaccactggaactgtaatcagaaaagatagccatgattagccaatctctatttaattgaatagaacgctgtttgttaaggcatggatgaaagatatagattctgctacggtcaataaaagagaattgcttaacaattttgcaaaatgtattagcgagtgagaaccgcatttggtactttccgggcaaacgccagacg                   >  1:192780‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                                                 aaGTGCTAAataagaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagagagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacgttcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttccgggcaaccgccagacgattctttattggt      <  2:131959‑M1/251‑243 (MQ=255)                                                                                                                                                                                                                                                     gCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtcctttccgggcaaccgccagacgattctttattggtaatg  <  1:173686‑M1/251‑247 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       TTTCAAATGAAACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCA  >  NC_000913/1299250‑1299744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.