Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,405,840 +T coding (802/939 nt) lrhA ← DNA‑binding transcriptional dual regulator LrhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,405,8401.T97.4% 130.9 / ‑5.1 39Y268N (TAT→AAT) lrhADNA‑binding transcriptional dual regulator LrhA
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base T (21/17);  minor base A (1/0);  total (22/17)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

TATGCGATGAAGGATTTTTACTAAAAAAAA‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATA‑GCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATC  >  NC_000913/2405598‑2406084
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                         
tATGCGATGAAGGATTTTTACTAAAAAAAA‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTCTCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGCTTATGGGAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTTTTACTGGACGGCTCATATGCACAGc                                                                                                                                                                                                                                                    >  1:737475/1‑251 (MQ=255)
   gCGATGAAGGATTTTTACTAAAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCa                                                                                                                                                                                                                                                   <  2:607389/250‑1 (MQ=255)
          aGGATTTTTACTAAAAAAAA‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCgg                                                                                                                                                                                                                                          <  1:411770/251‑1 (MQ=255)
             aTTTTTACTAAAAAAAA‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTAt                                                                                                                                                                                                                                       <  1:265082/251‑1 (MQ=255)
                 ttACTAAAAAAAA‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCCGCCGTCGATTATTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGCCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGTACGGATCATAAGCACAGCAAATTTTCGGTATCAgg                                                                                                                                                                                                                                   >  2:610618/1‑251 (MQ=255)
                      aaaaaaaa‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAg                                                                                                                                                                                                                                <  1:427938/249‑1 (MQ=255)
                                      gggTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGCTTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTCGCTCTCCATCCCCTGATAGATCACCTGGGCCAGCTCCTTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGGAGCGGCGGTTAAGcctcc                                                                                                                                                                                                                >  2:12994/1‑247 (MQ=255)
                                          ttAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGACTCAGAAATTAACTATCGTCCGTCGATTACTCGCTATCCCTTTCAATCTAAAATGAATCATCCCCTTCCGGCGCAGACATTGGGCTGTATTGCAAAGGTTTATGGTAGCTCTCCATCGCCTGATCGATCCCCTGGGCCAGCACCTTTTTACTTGCAGGATCATATGAACGGCAAATATTCGGTATCAGGTCGcggcgggtacccaaccacccc                                                                                                                                                                                                           >  2:470560/1‑236 (MQ=255)
                                           tAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGcggcgggaatacaacttccccc                                                                                                                                                                                                          >  2:129979/1‑235 (MQ=255)
                                                                  ttttACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACCCCACTC‑AGCACACGCCGGTCCGGGcc                                                                                                                                                                                 >  1:689614/1‑250 (MQ=255)
                                                                         cTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAACCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCct‑catc                                                                                                                                                                         >  1:546592/1‑251 (MQ=255)
                                                                                ctcAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTc                                                                                                                                                                                                      <  1:554730/217‑1 (MQ=255)
                                                                                  cAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCg                                                                                                                                                                  <  1:249482/249‑1 (MQ=255)
                                                                                    ggAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAACCACCTACTCCACTC‑CGCCCACCCCGGGCCGGGGTCAT‑CATCCCAAACGGCCt                                                                                                                                                              >  2:782430/1‑251 (MQ=255)
                                                                                          atctatcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGt                                                                                                                                                        >  1:129161/1‑251 (MQ=255)
                                                                                              atcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCa                                                                                                                                                      <  1:46563/249‑1 (MQ=255)
                                                                                              atcGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAACCATCTACCCCACTCCACCAC‑CGCAGGGCCGGGGTCAT‑CAACTCCACCGCCCATGCCgccccc                                                                                                                                                    >  2:679161/1‑246 (MQ=255)
                                                                                                  tccgtcGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGACCTCTACTCCACAC‑AGCCCCCCCCGGTCCCGGCTCAA‑CATCTCCACCCGCCTTCCCGTCACCCCa                                                                                                                                                 >  2:275447/1‑250 (MQ=255)
                                                                                                            aCTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCtt                                                                                                                                       <  1:574314/250‑1 (MQ=255)
                                                                                                             cTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTTCTCCACTC‑AGCACACGCAGGGCCGGGCTCCT‑CCTCTCAACCGGCCTTGCCCGCACGCCCAGACCGGCtttt                                                                                                                                     >  2:128819/1‑250 (MQ=255)
                                                                                                                               caacaaTGAATCATCCCCGTCCGGAGCAGACATTGGGCTGTAGTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGc                                                                                                                   <  1:5876/250‑1 (MQ=255)
                                                                                                                                              cccTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCCCTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCCCGCCCAAACCGGCCTT‑CACTGCCGCCCGAACGGCCGGGAGCGTCgcggcg                                                                                                   >  2:365457/1‑251 (MQ=255)
                                                                                                                                                  tCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACTAACGGCCGGAAGCGTCGAGGCGACa                                                                                                <  1:280777/250‑1 (MQ=255)
                                                                                                                                                  tCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGAc                                                                                                 <  1:129979/249‑1 (MQ=255)
                                                                                                                                                          aGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCCTATACTCCACTC‑AGCCCACGCAGGTCCGGGGTCAT‑CAACTCAACCGGACTGGCGGGACCGCCAAGAACGGGTTTACAC‑GCCGCACGAAAGGCCGGAAggggccgggggaacaaagcacg                                                                                        >  2:153309/1‑229 (MQ=255)
                                                                                                                                                              aTTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCCGAAGCGTCGAGGCGACA‑TAAGCCAGTCGcc                                                                                  >  1:630440/1‑251 (MQ=255)
                                                                                                                                                                                       ggTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGt                                                         <  1:269978/251‑1 (MQ=255)
                                                                                                                                                                                                ccATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCa                                                 <  1:128819/250‑1 (MQ=255)
                                                                                                                                                                                                     gCCTGAAAGACCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTAGCAGGTAGCGGCGGT‑AAGCCATCTACTCCCCGC‑AGCACACGCAGGACCGGGCTCAT‑CATCCCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCatat                                           <  2:219215/251‑1 (MQ=255)
                                                                                                                                                                                                          aTAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑CAGACATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTTAT‑CATCTCCACCGGCCTTGCCCTCCCGCCAAGACCCGCCTT‑CACTGCCGCCCGAACTGCCCGGAGCGGCGAGGCGGCAATAA‑CCATTCGCCAAGGAAACTCTGCCTTATTAAGAGTGACCAGCCCCACATcgcgg                                      >  2:34286/1‑250 (MQ=255)
                                                                                                                                                                                                           tAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CCCTGCCGCACGAACGGCCGGAAGCGTCGAGGCGGCA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATAGCGa                                      >  1:24247/1‑250 (MQ=255)
                                                                                                                                                                                                            aGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CAATGCCGCACGAACGGCCGGAAGCGTCGAAGCGACA‑TAAACCCGTCGCCATGGGATATATGCTTTATTAAACGTCGCCAGCACCCAATCGCGaa                                     >  1:557015/1‑250 (MQ=255)
                                                                                                                                                                                                                cACCTGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCCCACGCAGGTCCCGGCTCATACA‑CTAAACCGGCCTTGCCGTCACGCCAAGACCGGGCTT‑CACTGCCCCCCGAACGGCCGGAAGGCTCGCGGCTGCA‑TAAACCAATCCCCCTGGGAAATCTGGTTTATTAAACGCCGCCaaaccccaaacaccaaacggg                                >  2:547821/1‑231 (MQ=255)
                                                                                                                                                                                                                  ccTGTGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCt                              <  1:773235/251‑1 (MQ=255)
                                                                                                                                                                                                                    tGGGCCAGCTCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACAAGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCCAGACCGGCTTT‑CACTGCCGCCCGAACGGCCGGAAGCGTCGAGGCGAAC‑TAAGCCCGTCGCCATGGGATATCTGCTTTATTAAGCGTCGCCCGCACCATATCGCGAAACGGGCt                              >  1:167502/1‑249 (MQ=255)
                                                                                                                                                                                                                             tCATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCCCACGCAGGGCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGCGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATcc                    >  1:261114/1‑250 (MQ=255)
                                                                                                                                                                                                                              cATTATTACTGGACGGATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCGCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAg                  <  1:79737/251‑1 (MQ=255)
                                                                                                                                                                                                                                            ggATCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGa    <  1:365457/251‑1 (MQ=255)
                                                                                                                                                                                                                                              aTCATATGCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGGTCATCCAGCAATACAAGAGGGATc  >  1:126546/1‑251 (MQ=255)
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                         
TATGCGATGAAGGATTTTTACTAAAAAAAA‑GCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATA‑GCACAGCAAATATTCGGTATCAGGTAGCGGCGGT‑AAGCCATCTACTCCACTC‑AGCACACGCAGGTCCGGGCTCAT‑CATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTT‑CACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACA‑TAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATC  >  NC_000913/2405598‑2406084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑