Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,101,5250CT29.3% 68.8 / 10.9 42intergenic (+95/‑165)sodA/kdgTsuperoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base C (4/25);  new base T (12/0);  total (17/25)
Fisher's exact test for biased strand distribution p-value = 2.30e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTC  >  NC_000913/4101275‑4101775
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                 
aTTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTc                                                                                                                                                                                                                                                                   <  1:503523/251‑1 (MQ=255)
 tttCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTc                                                                                                                                                                                                                                                                   <  2:862716/250‑1 (MQ=255)
 tttCTGGCGCTACCGGCTTCCCGAGTATGGTCCGTGAGGTGTGGGAACAGGCTTATTACCTGAAATGCCAGAACCGCCGTCCGGACTTCATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCTCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTc                                                                                                                                                                                                                                                                   <  2:733622/250‑1 (MQ=255)
        cgcTTCCGGTTTCCCGATTATGGGCTTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGTCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATaaa                                                                                                                                                                                                                                                          <  1:901521/251‑1 (MQ=255)
                  ttCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGCAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCGATGAGGCGTATAGGCCGCATCTCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GGTTTTTTTGATCAATTTT‑AAAATaaaaaacaagaac                                                                                                                                                                                                                                                >  1:773648/1‑243 (MQ=255)
                        aTTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGataa                                                                                                                                                                                                                                          <  1:79586/251‑1 (MQ=255)
                        aTTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTTTGGTCAATTTT‑AAAATAAAAACAATggttcgatt                                                                                                                                                                                                                                           >  1:730103/1‑242 (MQ=255)
                                 cTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGAGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCCACGGCGG‑TGG‑‑GTTTTTTTTTATAAAATTC‑AAAATaaaaaaaaaaaatcggtaaaaataaaa                                                                                                                                                                                                                                  >  2:722294/1‑228 (MQ=255)
                                                   gCTTACTACCTGAAAATCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGAtg‑tg                                                                                                                                                                                                             <  1:219401/251‑1 (MQ=255)
                                                         aacCTGAAATGCCCGAACCGCCGGCCGGACTACATTAAATAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTGGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAAGTAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTg                                                                                                                                                                                                       <  2:309857/250‑1 (MQ=255)
                                                              gAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CAACGCCAACGGCGG‑TGG‑‑TTTTTTTGTGAGCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCa                                                                                                                                                                                                   <  2:938623/250‑1 (MQ=255)
                                                                   tCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACt‑ttt                                                                                                                                                                                             <  1:566877/250‑1 (MQ=255)
                                                                   tCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TGTTTTTGTTGTCAATTTT‑CTAATAAAAAAAATGATTCGCAAAAAATAAAAAAGAG‑TTTCAAttacagttggtttggtaaattttt                                                                                                                                                                                              >  1:698430/1‑229 (MQ=255)
                                                                    ccAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTa                                                                                                                                                                                            <  1:308071/250‑1 (MQ=255)
                                                                    ccAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑GGG‑‑GTTTTTTTTGGTCAATTTTTAAAAAAAAAAAAATGA‑CCTATTAAAAAAAAACAACAATTTAAATTAATG‑‑GGTTTTTATCACT‑TTTAt                                                                                                                                                                                           >  2:727927/1‑251 (MQ=255)
                                                                                        aCATTAAATAGTTCTGGAACGTGGGGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTa                                                                                                                                                                         <  2:956946/249‑1 (MQ=255)
                                                                                        aCATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTa                                                                                                                                                                         <  1:207680/249‑1 (MQ=255)
                                                                                          aTTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTTTTATCAATTTT‑AAAATAAAAAAAAAAATCCGGTGAAAATAAAACAACG‑GTTTTATTGATG‑TTGTTTTTTTCCCT‑TTTTTTGTTTAAATGAATGTCTAtttt                                                                                                                                                                     >  1:783528/1‑248 (MQ=255)
                                                                                            tAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CACCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGAGCACT‑TTTATTGATTAAATGAATGTCTATCTTc                                                                                                                                                                    <  2:834397/250‑1 (MQ=255)
                                                                                                       ggAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAac                                                                                                                                                       <  1:6214/251‑1 (MQ=255)
                                                                                                         aaCGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGGCTGG‑‑TTTTTTT‑TTATTAATTTC‑AAAATAAAAAAAAAGATCCCATAAAAAAAAAAAACCG‑TTTTCATTTATC‑TGGGTTTTATC‑CTCTTTTTTTTTTAAATGAATGTCTATTTTCGTTT‑ccctccaaac                                                                                                                                                     >  1:436901/1‑243 (MQ=255)
                                                                                                            gtggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTTTGGTCAAATTT‑AAAATAAAAAAAAAGATCCGGTAAAAATAAAAAAAAG‑TTTTAAATGATG‑GGGGTTTTATAAAT‑TTTTTTTATTAAATGAATTTCTATTTTCTTTT‑TCATCAAAAC‑Tg                                                                                                                                                  >  1:221400/1‑250 (MQ=255)
                                                                                                                     tGGGACGACGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑GGGGTTTTTTTTGTG‑CCAATTT‑‑AAAATAAAAAAAAAGATCCCATAAAACTAAAAAAGAG‑TTTTTATTGATT‑GGGTTTTTATCACT‑TTTTTTTTTTTAATGAATGTCTATCTTTCTTT‑CCATCCACAC‑TTATGCTccctt                                                                                                                                        >  2:80202/1‑248 (MQ=255)
                                                                                                                      tggACGAAGCAGCAGCATGTTTTGCGGCGAAAAAATAATCATTGGCCACCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGAGAAAAATAAAACAGCG‑TTTCAATTGATG‑TTGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCAtt                                                                                                                                        <  2:378661/249‑1 (MQ=255)
                                                                                                                      gggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTTCTGCAATGAGGCGTATAGGCCTCATATCAGCTTAAAAAATGAAC‑CAACGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTGTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTg                                                                                                                                       <  2:865006/251‑1 (MQ=255)
                                                                                                                               cagcGGCACGTTTTGCGGCGAAAAAATAATCAATTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TGTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTACAtaactctttaat                                                                                                                              <  2:783528/251‑12 (MQ=255)
                                                                                                                                   ggCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCAt                                                                                                                          <  1:755176/251‑1 (MQ=255)
                                                                                                                                          tttGCAGCTAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCTCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCCCT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGCAATTACGCATCAGccc                                                                                                                    <  1:282049/250‑1 (MQ=255)
                                                                                                                                             gcggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTa                                                                                                                 <  1:632965/250‑1 (MQ=255)
                                                                                                                                                        ataatCATTTGCCGCCTGCTTCAATGAGGCTTCTAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCTCCAACGGCGG‑TTG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAAGTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCGTTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCgt                                                                                                    <  2:784483/251‑2 (MQ=255)
                                                                                                                                                            tCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTTTGATCAATTTT‑AAAATAAAAAAAAAGATACCATAAAAAAAAAACAGCG‑GTTCAATTAATG‑GGGGTTTGATCACT‑TTTTTTTATTAAATGAATGTCTTTCTTTGTTTTCCTTCA‑CCC‑TGATTCTCCATTTTGGGATTACGCATCCCCCCTTAAAAATA‑AGCCGACAgg                                                                                                >  1:58905/1‑251 (MQ=255)
                                                                                                                                                                ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGa                                                                                             <  2:119621/250‑1 (MQ=255)
                                                                                                                                                                         gctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGGTTAAATTT‑AAAAAAAAAACAAAGATCCGATAAAAAAAAAACAACGGTTACAAT‑GATG‑GGGTTTTGATCAAT‑TTTATTTATTTAAAGAAAGTCTATCTTCGTTT‑TCATAAACAA‑TGATGCTCCCATGAGGAATTACGGCTCAGCCCTTAAAAAAA‑TGCCGACAGGTGATGGaaaagcc                                                                                   >  1:471428/1‑247 (MQ=255)
                                                                                                                                                                           tgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAACATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTTTGATCAATTTC‑AAAATAAAAACCATGATTCGCCAAAAATAAAAAAGCG‑TTTCTATTTATG‑TGGGTTTTATCTCT‑TTTTTTTATTTAATGAATTTCTATCTTCGTTT‑TCATCAACCC‑TGATTCTCCATTTAGGAATTTAGCATCAACCCTTAAAAata‑ttcccgacggggattgaaatgccg                                                                                  >  1:877358/1‑227 (MQ=255)
                                                                                                                                                                            gcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTGGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAg                                                                                  <  1:414055/249‑1 (MQ=255)
                                                                                                                                                                                       tataGGCCGAATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGGTCAATTTT‑AAAATAAAAAAAATGATCCAATTAAAATAAAACAACG‑GTTCAAATGATGATGTTTTTAAT‑ACT‑TTTATTTTTTAAATTAATGTCTATTTTTGTTT‑TCATCAACACCTG‑TTCTCCCTTTAGGGATTACGCATCCACCCTTAAAAATA‑TTCCCCTACGTGATGGAAACACAGATAAAACACTcc                                                                      >  1:752813/1‑249 (MQ=255)
                                                                                                                                                                                        ataGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTGTGGTCAATTTT‑AAAATAAAAACAAAGATCCGGTAAAAATAAAACAGCG‑GTTTTATTGATG‑TGGTTTTGGTCACT‑TTTTTTTATTAAATGAATGTCTATCTTCGTTT‑CCATAAACAC‑TGATGCTCCATTGAGGAATTACGCATCAACCCCTAAAAATA‑TGCCGACAGGTGGTGGGAATACAGATAAAACACTCgct                                                                    >  1:866134/1‑249 (MQ=255)
                                                                                                                                                                                            gCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTTTGGTCAAATTT‑AAAAAAAAAAAAAAGATCCCCTAAAAATAAAAAAGCG‑TTTTCATTTTTG‑TGGTTTTGATCACT‑TTTTTTTATTAAATGAATGTTTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCCTTGAGGAATTAAGCCTCAACCCCTAAAAAAA‑TACCGACAGGGGATGGAAAAGCAGATAAAAAGCCCGATTggg                                                                >  1:405779/1‑249 (MQ=255)
                                                                                                                                                                                             ccGCATATCAGCTTAAAAAAT‑AACTCATCGCCAACGGCGT‑TTG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TTGTTTTGATCACT‑TTTATTGATTAAATTAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑GTCCGACAGGTGATGTAAATGCAGAGAAAACGCTCGATTgaga                                                               <  2:135613/251‑1 (MQ=255)
                                                                                                                                                                                                 atatCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TTCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAAt                                                           <  2:945143/251‑1 (MQ=255)
                                                                                                                                                                                                   atCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑GTTTTTTTTGATCAATTTC‑AAAATAAAAAAAAAGGTCCGCTAAAAAAAAAAAAGCG‑TTTCCATTGATG‑TGGTTTTTATCACT‑TTTATTTCTTTAATTAAAGTTTTTTTTCTTTT‑TCCTCAACAC‑TTATGCTCCCTTTAGGAATTTCGCATCAGCCCTTAAAAATA‑TTCCGACAAGGGATGGGAAAGCAGATAAAAAGCTCCATTGAGAAAATcc                                                         >  1:936674/1‑251 (MQ=255)
                                                                                                                                                                                                           aaaaaaTGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCGCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCggggggg                                                 <  1:57426/251‑1 (MQ=255)
                                                                                                                                                                                                             aaaaTGAAC‑CATCGCCAACGGCGG‑AGG‑‑TTTTTTTTTGTTACATTTT‑AAAATAAAAAAAATGATCCGATAAAAAAAAAAAAGCG‑TTTTAATTTATG‑TGGGTTTTATCACT‑TTTTTTGATTAAATGAATGTTTATCTTCGTTT‑TCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAACCCTTAAAAATAATGC‑GACAGGGGGTGGAAAAGCAGATAAAAAGCTCGGTTGGGAAAATCCCggggggggg                                               >  1:835415/1‑249 (MQ=255)
                                                                                                                                                                                                                                        tg‑‑tTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCGCGTCCCGCTATTCCTTgg                       <  1:241427/249‑1 (MQ=255)
                                                                                                                                                                                                                                                 ttGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACtg                <  1:80202/250‑1 (MQ=255)
                                                                                                                                                                                                                                                              c‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTtctc  <  1:519152/251‑1 (MQ=255)
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                 
ATTTCTGGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAAC‑CATCGCCAACGGCGG‑TGG‑‑TTTTTTTGTGATCAATTTC‑AAAATAAAAACAATGATCCGATAAAAATAAAACAGCG‑TTTCAATTGATG‑TGGTTTTGATCACT‑TTTATTGATTAAATGAATGTCTATCTTCGTTT‑CCATCAACAC‑TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATA‑TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTC  >  NC_000913/4101275‑4101775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑