New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3653230	NA (NA)	5 (0.050)	5/494	7.0	17.2%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	4580649 =	24 (0.250)					coding (814/1395 nt)	hsdS	type I restriction enzyme EcoKI specificity subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTT  >  NC_000913/4580399‑4580891                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   aaaggtgttTGCACGCAGTGCATCATTGCATTTCGTGTTGAGGGGGATGAAAAAAATAGTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATTTTTTAATTTTTTGAATAACCCACAAACACCAACAAATTCTAAACTTCCGGTATAGCGAGTAAATAAAAGATCTCCATCTTGTATTTTGTGGCGGTTTAGTTCCCTTTCTGAACATTc                                                                                                                                                                                                                                                    <  2:238022/246‑1 (MQ=255)            cACGCAGTTCATCATTGCATTTCGTGATGAGGGGGATGAAAAAAATATTTCTATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGAGGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGaa                                                                                                                                                                                                                                         <  2:841045/251‑1 (MQ=255)                      atcatTGCATTTCGGGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTg                                                                                                                                                                                                                               <  2:384946/251‑1 (MQ=255)                      atcatGGCATTTCTTGCTGATGGGGATGAAAAAAATATGTCGATATATTCTGGTAAAGCATCTGTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTGGATGTGGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAATATCTCCATCGTGTAATTGGTGGCGGTTTAGTTCTCTTTCTGAACATTCTAGAAACCGAATATCGTTTTg                                                                                                                                                                                                                               <  2:100735/251‑1 (MQ=255)                                        gAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCa                                                                                                                                                                                                               <  1:676042/249‑1 (MQ=255)                                             ggATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAg                                                                                                                                                                                                        <  1:963413/251‑1 (MQ=255)                                                   aaaaaaTATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTTCATGGCCAGCACGTACAGAACTaa                                                                                                                                                                                                  <  1:209970/251‑1 (MQ=255)                                                                         ggTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAac                                                                                                                                                                            <  1:634734/251‑1 (MQ=255)                                                                                      tGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACGTTCAtt                                                                                                                                                                <  2:212535/250‑1 (MQ=255)                                                                                            aTCGAGCTCGAATAAGTTTAACAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCttt                                                                                                                                                         <  2:118591/251‑1 (MQ=255)                                                                                                    cGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTGTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGaa                                                                                                                                                   <  1:447835/249‑1 (MQ=255)                                                                                                      aaTAAGTTTAACAGGATATAGCAAATTTTGATGTATTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGGTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTAGTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGAc                                                                                                                                               <  2:539078/251‑1 (MQ=255)                                                                                                             ttATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTAc                                                                                                                                         <  1:272505/250‑1 (MQ=255)                                                                                                                                                   cAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTCACTTTTTTAACATTCTAATAACCGAAAATCGTTTTGATCTTCATGGCCCACACGTACAGAAATAAAGCGGAGTATTGGATGAGCAACACCACTTTCTTTTTGCTTTTATGAAAAAACATTACGTAAATAAGTTTAGATAGATTCAAAATTTAACTTTTTa                                                                                                   >  1:248516/1‑250 (MQ=255)                                                                                                                                                       aaCCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAAATTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATAc                                                                                              <  2:332349/251‑1 (MQ=255)                                                                                                                                                            acaAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAAt                                                                                         <  2:98666/251‑1 (MQ=255)                                                                                                                                                                      acaaATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTc                                                                               <  1:212057/251‑1 (MQ=255)                                                                                                                                                                                    tCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCAt                                                                  <  1:539359/250‑1 (MQ=255)                                                                                                                                                                                      cGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCAtttt                                                               <  1:105817/251‑1 (MQ=255)                                                                                                                                                                                                                       gTAAATTGTGGCGGTTTAGTTCACGTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAAt                              <  2:891890/251‑1 (MQ=255)                                                                                                                                                                                                                              gtgtcGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTTCGCCCCCCAAtccctct                        <  1:285901/246‑7 (MQ=255)                                                                                                                                                                                                                              gtgGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCt                        <  1:285912/250‑1 (MQ=255)                                                                                                                                                                                                                                                    gAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGTCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTATCTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGAttt  <  1:915766/250‑1 (MQ=255)                                                                                                                                                                                                                                                    gAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGAt    <  1:577774/248‑1 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   GAAGTTGTTTTCACGCAGTTCATCATTGCATTTCGTGCTGAGGGGGATGAAAAAAATATTTCGATATATTCTGGTAAAGCATCTTTGGTTAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATTTAACTTCTTAAATACAGAATGTTGCGGCTCAAAATTACGCCATTTTTCTGTCAATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTT  >  NC_000913/4580399‑4580891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.