| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,474,425 | 0 | T | C | 98.3% | 196.7 / NA | 59 | K43R (AAA→AGA) | rpsL | 30S ribosomal subunit protein S12 |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (27/31); total (27/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAAGCCTTAGGACGCTTCACGCCATACTTGGAACGAGCCTGCTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTTTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGAT > NC_000913/3474179‑3474670 | tAAGCCTTAGGCCGCTCCACGCCATCCTTGGAACGAGCCTGCTTCCGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAg < 1:592529/250‑1 (MQ=255) aGCCTTGGGACGCTCAACGCCATACTGGGAACGAGCCGGTTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGCCTTTAACCCGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAg < 2:348260/251‑1 (MQ=255) catAGGAAGCTTCACGCCATACTTGGAACGAGCCTGCTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGACTTTAACACGACCGCCACGGATCAGGATCACGGCGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGCAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGGGTTCGGTTTTCTAGGAGTgg > 2:465690/3‑251 (MQ=255) tAGGACGCTTCACGCCATACTTGGAACGAGCCTGCTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGTCATAATTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGgt > 2:507142/1‑250 (MQ=255) cctccATTCTTGGAACGAGCCGGCTTACGGTCTTTAACGCCGGTGCAGTTAAGCTCACCACGTACGGTGTGGTAACGAACCCCCGGGGGGTTTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACg < 2:699748/248‑1 (MQ=255) aCTTGGAACGAGCCTGCTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACa < 1:630110/250‑1 (MQ=255) ggcaCGAGCCTGCTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTACAGACAACCCGGGCGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGCTGTAGGCAGTCACTTCGCAACCGTTAGTCAGACGGAAC‑CGGCATACTTTACGCAGCGCGGCGTTCGGTTTTCTGTGAGTGGTCGTATATAAACGGATACATACGc > 2:441303/4‑251 (MQ=255) accGAGCCGGCTTACGGGTTTTAACGACGGAGCAGTCAAGCGCCCCCCGGACGGGGTGGTAACGAACCCCCGGGAGGTTTTAAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCa < 2:411731/249‑1 (MQ=255) aCGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTcc > 1:684440/1‑249 (MQ=255) gcccGGAGCCGTTAACCGCACCACGTATGGTGTGGTAATGAACCCCCGGGAGGTTTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAgc < 2:129976/249‑1 (MQ=255) cGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAAAACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCAATTCGCACCCGTTAGTCAGACG‑AACACGGCATACTTTCCGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCAACGTTTTTGCGGGCATGCTTCCAgc > 2:427109/1‑251 (MQ=255) gCCGGAACAGTCAATCGCACCACGTACGGTGTGCTAACGAACACCCGGTAGTTCTTTAACCCCACCGCCACGTATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACCGCATTCTTTACGCAGCGCGGAGTTCTGTTTTCTAGGAGTGTTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAgcg < 1:683170/251‑1 (MQ=255) cccacGTACGGGGGGGAAACGACCCCCCGGGGGGTTTTTAACACGACCGCCACGGATTAGGATCACGGAGTGCTCCTGCAGGTTGTGACCCTCACCTACGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCg < 2:515396/250‑1 (MQ=255) aaCACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGtt > 1:609792/1‑251 (MQ=255) acacCCGGGGGGTCTTTTACAAGACAGCAACGGATCAGGCCCACGGAGTGCTCCTGCAGGATGCGACATTCCACACCGATGCAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGCACGGTAGTCTATACACGAGTACATACGCCCCGTTTTTGCGGGCATGCTTCCAGCGCACGCACGTTGCTTTTCGAAACTTTGCTAGCCCGTGGttt > 2:699835/1‑251 (MQ=255) cGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCCGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGt > 1:689448/1‑250 (MQ=255) gAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAgg > 1:109554/1‑147 (MQ=255) gAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAgg < 2:109554/147‑1 (MQ=255) tttAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGCTGTAGGAAGTAACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGAATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCAAGCGCAGGCACGTTGCTTTTCGCAAATTTGCGAGCACGTGGTTTGCGTACCAGCTGGt > 2:602727/1‑251 (MQ=255) ttAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTgg < 1:263463/249‑1 (MQ=255) tAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGtt < 1:301728/250‑1 (MQ=255) aaCACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAACACGTGGTTTGCGTACCAGCTGGTTa > 2:481570/1‑250 (MQ=255) accGACCGCCACGGATCAGGATCTCGGAGTGCCCCTGCAGGTTGTGACCTGCACCACCGATGTAGGAAGTCACTTCGAACCCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACt < 2:683557/249‑1 (MQ=255) ccACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAGACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCAt > 2:99903/1‑251 (MQ=255) ggatcaggatcaCGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGCGCACGTGGTTTGCGTACAAGCTGGTTAACTGTTGCCATTaa > 2:509025/1‑250 (MQ=255) ggatcaggatcaCGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTAAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTACGGTTTTCTAGGCGTGGTAGTATATCCACGAGTACATACGCCCCGGTTTTGCGGGCATTCTTCCCGCGCAGACACGTTGCTTTTCGCAACTTTGCGGGCACGTGGATTGCGTCACAACTGGTTACCTGTTACCAttga > 2:559741/1‑248 (MQ=255) attatgacggtgtgtgccagCAGGTTGTGACCAGAACCAAGGATGTAGGAAGTCACTGCGAAACCGTTAGGCAGACG‑AAGACGGCATGCTTTACGCAGCGAGGAGTTCGGTTTTCTATGAGTGGTAGTATATACACGAGTACATACGCCACGGTTTTGCTGGCATGCTTCAAGCGCAGGCACGTTGCTGTGCGCAACTTTGCGAGCACGTGGGGTGCGTACCAGCTGGTTAATTTTTGCAATTAAATAGCt < 2:52391/232‑1 (MQ=255) atccaggattGCTCCTGCATGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCTGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCt < 2:18957/242‑1 (MQ=255) ggAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGttt < 1:138203/251‑1 (MQ=255) tgtgACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTa < 1:389516/250‑1 (MQ=255) gACCTTCACCACCGATGTAGGAAGTCACGTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGAGGAGTTTGGTTTTCTAGGAGTGGTAGTATATACCCGATTACATACGCCACGTTTTTGCTGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTGCGTAAac < 1:420938/250‑1 (MQ=255) tCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTg > 2:283939/1‑194 (MQ=255) tCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTg < 1:283939/194‑1 (MQ=255) ccaccGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGtaata > 2:66371/1‑250 (MQ=255) caccGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCCCGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCACCTTTGCGAGCACGTGGTTTGCGTACAAGCTGGTTAACTGTTGCCATTACATAGCTCCTGGTTTTAGCTTTTGCTTAGTAAACACGtactaa > 2:179856/1‑250 (MQ=255) caccGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGtaataa > 1:492510/1‑250 (MQ=255) gTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACaa < 1:176569/251‑1 (MQ=255) tCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATg < 1:441442/249‑1 (MQ=255) cGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAgg > 1:640558/1‑251 (MQ=255) gAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAgg > 1:340229/1‑250 (MQ=255) gAAACCGGTAGTCAGACG‑AACTCGGCATACTTTTCGCAGCGCGGAGTGCTTTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATTCTTCCAGCTCAGGCACGTTGCTTTTCGCAACTTTGCGAACACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTGCGTAAACACGTAATAAAACGTCCTCACACAATATGAgta < 2:655280/251‑3 (MQ=255) ccGTTAGTCAGACT‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTTGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGcc < 1:695692/251‑1 (MQ=255) cggtAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGGTGCTTTTCGCAACTGTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTGTAGCTTTTGCTTCGTAAACACGTGATAAAACGTCCTCACACAATATGAGGACGCCg < 1:441303/248‑1 (MQ=255) cAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAAtttt < 1:66371/250‑1 (MQ=255) acGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAggg < 1:291231/245‑1 (MQ=255) acGGCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAggg > 2:291231/1‑245 (MQ=255) gCATACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCgc > 2:625347/1‑250 (MQ=255) aTACTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGaa > 1:273466/1‑250 (MQ=255) cTTTACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATAAACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAgg > 1:624188/1‑251 (MQ=255) ttACGCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGgt < 1:507142/250‑1 (MQ=255) ttgCAGCGCGGAGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTCGCGGGCATGCTTCCAGCGCAGGCACGTTGATTTTCGCACCTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAACTTTAGGGCGATGCCGAAAAGgtgt < 1:394922/248‑1 (MQ=255) cgcagggcggatggcGGTTTTCTAGGAGTGGTAGGATATTCACGAGTACATTCGCCACGATTTTGCGGGCATGTTTCCAGCGCAGGCGCGTTGCTTTTCTAAACTTTGCGAGCACGTGGTTTGCGTACCAGCGGGTTAACTGTTTCCATTAAATAGATTCTGGTTTTAGCGGTTGCTTCGTAAACACGTAATAAAACGTTCTCACACAATATGAGGTCGCCGAAATTTAGGGCGATGCCGAAAAGGTGTCa < 2:631616/237‑1 (MQ=255) gcgGAGTTCGGTTTTCTAGTAGTGGTAGTATATACACGAGTACATCCGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCGCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAat < 1:300661/251‑1 (MQ=255) aGTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAAtata > 1:647926/1‑250 (MQ=255) gTTCGGTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACa < 1:221480/251‑1 (MQ=255) ggTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACg > 1:23206/1‑250 (MQ=255) ggTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACg > 1:35808/1‑250 (MQ=255) ggTTTTCTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGa < 1:199102/251‑1 (MQ=255) gTTTTTTATGGGTGGTGTTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGACCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGAt < 2:378854/251‑1 (MQ=255) | TAAGCCTTAGGACGCTTCACGCCATACTTGGAACGAGCCTGCTTACGGTCTTTAACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG‑AACACGGCATACTTTACGCAGCGCGGAGTTCGGTTTTTTAGGAGTGGTAGTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACGCCGAATTTTAGGGCGATGCCGAAAAGGTGTCAAGAAATATACAACGAT > NC_000913/3474179‑3474670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |