| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 275,509 | Δ97,240 bp | [mmuP]–[mhpD] | 91 genes [mmuP], mmuM, afuC, insB2, insA2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, ykgS, insB3, insA3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, matA, ykgL, ykgO, ykgM, ykgR, insE1, insF1, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahV, pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, [mhpD] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 275509 | 372748 | 97240 | 38 [0] | [4] 42 | [mmuP]–[mhpD] | [mmuP],mmuM,afuC,insB2,insA2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,ykgS,insB3,insA3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,matA,ykgL,ykgO,ykgM,ykgR,insE1,insF1,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH,betA,betB,betI,betT,yahV,pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,[mhpD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 275508 | 0 (0.000) | 38 (0.610) | 36/460 | 0.7 | 100% | coding (184/1404 nt) | mmuP | S‑methyl‑L‑methionine transporter |
| ? | NC_000913 | 372749 = | 0 (0.000) | coding (635/810 nt) | mhpD | 2‑hydroxypentadienoate hydratase | |||||
ACGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGTTATGCAGTGTCTGGGCGAGCTGTCGGTCGCGATGCCGGAGACCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGGTATACCGTGGCCTGGCTTTACTGGCTGACCTGGACCGTGGCGCTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGTACTGGTTTCCACAGGTGCCGGTATGGGTCTGGTGCGTGGTGTTCTGCGCGATTATTT > NC_000913/275268‑275739 | aCGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAAAGCCGGTCGGCC‑ATCTGATTGGGGCGCTGGGGGGCTTGGTGGcaagcaaaa > 1:605464‑M1/1‑241 (MQ=255) ggTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGGTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCCCTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggcc < 1:390158‑M1/251‑15 (MQ=255) ttcttTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGGACGCTGCT‑GGCCTATCTGAGTGGTGCGCTGGCGGGGTGGGGGGcccgcaaaatagccagtctgggtgaac > 1:444841‑M1/1‑224 (MQ=255) ttGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaacc < 1:39782‑M1/248‑29 (MQ=255) aCGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcatt < 1:171875‑M1/250‑51 (MQ=255) cGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGGACGCTGCT‑GGCCTCTCTGCTTTTTTCGCTGGTGGTCTTGCTTGcacgccaaattggcagtctgggtggaacgctgcgcccccgcgatatcattat > 1:41567‑M1/1‑199 (MQ=255) ttAGAAGGTTAGATGCAAACAACACAACAAAAGGCCCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATGATTCGTCAATACCGGGTACATCAGTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattctta < 1:466689‑M1/250‑55 (MQ=255) ttATATGCAAACAACTCAACAAAATGCGCCCCTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCTGCGTGATTGGCACATGATTATTCTTCAATACCGTGTACATCATTTCCACCATTGGAGCGTCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTTGTCTGGCTGGcacgcaaaatggccagtctgggtgatccgctgcgcaccggagatatcattctttccggggca < 1:281301‑M1/250‑63 (MQ=255) gCAAACAAAACAAAAAAATGCGCCACTGAAGCGTACAATGAAAACGCGTCACCTGATGATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTAGTCGTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCGGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatgtccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtc < 2:26895‑M1/251‑70 (MQ=255) acaacacaacAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCC‑GGCCTATCTGATTTGTGCGCTGGGGGTCTGGCTGGcacgcaaaaaggcccggctgggtggaacgctgcgcaccggggaaatcattcttacccgggcattaggtccg > 1:583511‑M1/1‑178 (MQ=255) caacacaacaAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatg < 1:574529‑M1/251‑75 (MQ=255) cacaacaAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtg < 1:233745‑M1/251‑78 (MQ=255) aaaTGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGGACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaaaggccagtctggggggaacgctgcgcaccggggatatcattttttccggggcattaggtccgatggggggggggg > 1:209741‑M1/1‑167 (MQ=255) cACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGTGGCGTGATTGGCTCAGGATTATTCTTCAATACCGGGTACAGCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggc < 1:272349‑M1/251‑93 (MQ=255) gATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcata < 1:701915‑M1/250‑123 (MQ=255) attttgcttGCCTTGGGCGGCGTGATTGGCAAAGGATTATTCTTCAATACCGGGTACATCATTTCCGCCCCTGGAGCGGCGGGAACGCGGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCGGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcatag < 2:169239‑M1/246‑124 (MQ=255) ttCCTTGGGGGGAGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccaggctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgtttttaagcccatattgaaggcataggttcagtt < 2:186640‑M1/250‑132 (MQ=255) tGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtcc < 1:364806‑M1/175‑71 (MQ=255) tattCTTCAATACCGGGTACATCATTTCCACCACTGGAGGGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccaggctgggtgaaccgctgcgccccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaa < 2:148465‑M1/250‑161 (MQ=255) gccgGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatattattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtc < 1:685822‑M1/250‑173 (MQ=255) ccctggtactTCAGTTCCACCACCGGAGCGGCGGGACCGCTGCT‑GGCCTATCTGATTGGGTCGCTGGTGGTCTGGCTGTcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagccaatattgaaggcataggttcatttgctgcgacattgtcaagcgcagccccaaaaggaagtttgt < 2:685718‑M1/246‑172 (MQ=255) gcattGCCACCCCTGGAGCGGCGGGAACGCTGCT‑GTACTATCTGATTTGGGCGCTGGTGGGCTGGCGCGcacgcaaaatggccagtctgggtgaaccgatgcgcaccggagatatcattcttaccggggcagtagggccgatggtggcggtgaatgcgggcgagcggtttgaagcccacattgaaggcagaggttcagttgctgcgatattttcaagcgcagccccaaaaggaagtctgtcaggagtaagc < 2:557060‑M1/250‑183 (MQ=255) catTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagc < 1:165227‑M1/250‑183 (MQ=255) cggcggGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatgggggcggtgaatgcgggcgatcggtttgaagcccatattgaaggcataggtttagttgctgcgacattttcaaacgcagccccaaaaggaagtctgtcctgaggaaacgtaaagtcgccattttcg > 1:413765‑M1/1‑51 (MQ=255) cggGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggtt < 1:206710‑M1/251‑204 (MQ=255) cggGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatataattcttaccggggcattagggccgatggtggcggggaatgcgggcgatcgttttgaagcccatattgaaggcctaggttcatttggtgcgacattttcaagcgaagcccccaaagggagtattgcatgagtcagcgtcaagtcgccattataggtt > 2:180832‑M1/1‑48 (MQ=255) ggAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagt < 2:172463‑M1/224‑179 (MQ=255) ggAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagt > 1:172463‑M1/1‑46 (MQ=255) gAACGCTGCA‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggtgcattaggtccgatgatggcggtgaatgcgggagatcgttttgaagccacaattgaagggataggttcagttgctgcgaccttttcaatagcagccccaaaaggtaatctgtcatgagaaagcgtaaaaccgacattatcggttttg > 2:517890‑M1/1‑45 (MQ=255) gctgct‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggca > 1:33811‑M1/1‑41 (MQ=255) gctgct‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgatgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattataggttctggca > 1:577498‑M1/1‑41 (MQ=255) gct‑gGCCTATCTGATTGGGGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcaaca < 2:209741‑M1/250‑213 (MQ=255) gCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgat < 1:422889‑M1/129‑96 (MQ=255) atatgatTGGTGCGCTGGTGGGCTGGCCGGcacgcaaaatggccagtctgggtgatacgctgcgcaccggagatatcattcttaccggggcagtaggtccgatggtggcggtgtatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcatcattggtac < 2:444841‑M1/246‑220 (MQ=255) tCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggag > 1:196555‑M1/1‑29 (MQ=255) tCTGATTGGTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggag < 2:196555‑M1/71‑43 (MQ=255) ggTGCGCTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcaaaattggtaccgatctgatg > 1:56084‑M1/1‑22 (MQ=255) gcgcTGGTGGTCTGGCTGGcacgcaaaatggccagtctgggtgaaccgctgcgcaccggagatatcattcttaccggggcattaggtccgatggtggcggtgaatgcgggcgatcgttttgaagcccatattgaaggcataggttcagttgctgcgacattttcaagcgcagccccaaaaggaagtctgtcatgagtaagcgtaaagtcgccattatcggttctggcaacattggtaccgatctgatgat < 1:552848‑M1/250‑232 (MQ=255) | ACGCGGTATAACAAACCTTCTTTGGATGTTTAGATGTCCATACGTTTAGAAGGTTATATGCAAACAACACAACAAAATGCGCCACTGAAGCGCACAATGAAAACGCGTCACCTGATTATGCTTTCCTTGGGCGGCGTGATTGGCACAGGATTATTCTTCAATACCGGGTACATCATTTCCACCACTGGAGCGGCGGGAACGCTGCT‑GGCCTATCTGATTGGTGCGCTGGTGGTCTGGCTGGTTATGCAGTGTCTGGGCGAGCTGTCGGTCGCGATGCCGGAGACCGGAGCGTTTCACGTTTATGCCGCGCGCTATCTTGGTCCGGCTACCGGGTATACCGTGGCCTGGCTTTACTGGCTGACCTGGACCGTGGCGCTGGGTTCGAGCTTTACCGCCGCTGGATTCTGTATGCAGTACTGGTTTCCACAGGTGCCGGTATGGGTCTGGTGCGTGGTGTTCTGCGCGATTATTT > NC_000913/275268‑275739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |