New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	62 (0.950)	58/480	0.2	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 1978494	0 (0.000)					intergenic (‑297/+24)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB

TGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTAC  >  NC_000913/1396998‑1397487                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                          tGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAAt                                                                                                                                                                                                                                                  <  1:291408/250‑1 (MQ=31)  gcttaaaaaCGATAACCAACCGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGAGTCGGCAGTGGGAGAGATCTCACTAAAAACGGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCAGTTACGGGAGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAAGTCCCCCGCTGATTCGCACCTGCACTAACTAATCa                                                                                                                                                                                                                                                <  2:340620/247‑1 (MQ=11)     gAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGTACCAAATGATACGGCTGTGGGAGAGATCTCACTAAAAACTGGGGATAGCGCCTTAAATGGCGAAGAAACGGTCTAAAGAGGCTGATTCAAGGCATTTACGGGAGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCaa                                                                                                                                                                                                                                               <  1:677023/249‑1 (MQ=255)     gAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATg                                                                                                                                                                                                                                             >  1:263926/1‑251 (MQ=33)                       ggCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATcc                                                                                                                                                                                                                             <  1:277092/249‑1 (MQ=255)                          gATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCt                                                                                                                                                                                                                         >  1:611005/1‑250 (MQ=255)                           aggTTATTCACGCTGGCCAACTTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCTCTAAAAACTGGGGATAACACCTTAATTGGCTAAGAAACGGTCTAAATAGGCTGATTCAAGGCCTTTACGGGAGAAAAAATCTGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGATTTTCCCCGCTTACTCGCTCCTTCCCTAACTAATCAATGCGTTGCCTGTAAATCCAGCTaa                                                                                                                                                                                                                       <  2:563391/249‑1 (MQ=14)                             gTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAaga                                                                                                                                                                                                                     <  2:119100/251‑1 (MQ=255)                                    aCGCTGGCAAACCTGTTTCGGGCGGACCAAATGATACGTAAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATAGCGAAGAAACGGTCTAACTAGGCTGATTCAAGGCATTTACGGGAGAAGAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGACGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTACCTAATCAATGCGTTGATTGTACATCCGGCTAAgcggtgagg                                                                                                                                                                                                              >  2:358764/1‑251 (MQ=14)                                       cTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGttt                                                                                                                                                                                                           >  2:275451/1‑251 (MQ=255)                                         ggCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGtttt                                                                                                                                                                                                          <  1:275451/250‑1 (MQ=255)                                            cAACCTGTTTCGGGCGGACCAAAGGATACGTCAGGGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCaga                                                                                                                                                                                                      <  2:88743/251‑1 (MQ=255)                                             aaCCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAAGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCCGCTAAGAGGCGAGGTTTTCag                                                                                                                                                                                                       >  2:250464/1‑249 (MQ=255)                                                  gtctcggtcggAACAAATGATACTGCAGTGGGAGAGAACTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCGAACTAAGCAATGCGTTGATTGTAAATCCATCTAAGAGGTGAGTTTTTCAGAGctg                                                                                                                                                                                                  <  2:234423/246‑3 (MQ=14)                                                    ttCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATGTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACa                                                                                                                                                                                               <  1:442893/250‑1 (MQ=255)                                                        ggCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTATAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATGTCCCCGCTTATTCGCACCGTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTTAGAGGTGAGGTTTTCAGAGCAGACAACGGt                                                                                                                                                                                          <  1:230359/251‑1 (MQ=255)                                                                  aTGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCAt                                                                                                                                                                                <  1:480072/251‑1 (MQ=255)                                                                            agggggAGAGACCTCACTAAAAACTGGTGATACCGCCATAAATGACGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCGTAAACATGAAGAAATGTAATGACTGAGTCAGCCGAGAAGAATTTCCCCTCTTAGTCGCTCCTTCCCTAACTAATCAAGGCGTTGATTGTAAATCCAGCTTTGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAAGGTCATGGTATTGTTa                                                                                                                                                                      <  2:636788/248‑1 (MQ=18)                                                                             gggggAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAATAAATGTTCTAAATAGGCTGATTCAAGGCAGGTACTGGAGAAAAAATCGGCTCAAACATGAAGAAATGTAATTACTGATTCAGCCGAGAAGAATTGCCACGCTTATTCTCACCGTCCCTAACTAAGCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGATGTTTTCAGAGCAGACAACAGTGAAATGTCATGGTAGTGTTag                                                                                                                                                                     <  2:77237/249‑2 (MQ=18)                                                                             gTGGGAGAGAGCTCACTAAAAACTGGGGATAAGGCCTTAAATGGCGAAGAAACGGTCGAAATAGGCTGATTCAAGGCAGTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTAGCACCGTGCCTAATTAAGCAATGCGTTGATTGTAAAACCAGCGAAGAGGTGAGGTTCTCAGAGCAGACAACGGTGAAATTTCATGGTAGTGTTAc                                                                                                                                                                     <  2:599344/251‑1 (MQ=17)                                                                                ggAGAGATCTCACCAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCGGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGtt                                                                                                                                                                  <  2:671778/251‑1 (MQ=255)                                                                                  agagctctatcTAAAAACTGGTGATAAAGCATTAAATGGCGAAGAAACGGTCGAAATAGGCGGATTCAAGGAATGTACGGGAGAAAAAATCGGCTCAAACATGAATAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTGCCCTAACTAATCAATGCTTTGATTGTAAATCCAGCTAAGTGGTGAGGTTTGCAGAGCAGACAACGGTGAAATGTCATGGCATGGTTACGTTTa                                                                                                                                                                <  2:130200/241‑1 (MQ=18)                                                                                         tcACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAAc                                                                                                                                                          >  2:225467/1‑250 (MQ=255)                                                                                                     ggggATCACGCCTTAAATGGCGAAGAACCGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGCAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTACCTTATCAATGCGTTGATTGTAAATCCAGCTACGCGGTGAGGTTTTCAGAGCAGACAAAGGTGAAATGTCATGGTATTGTTACTTTTAGGTAACACGAAATTTGTCt                                                                                                                                             >  2:86331/1‑251 (MQ=21)                                                                                                      gggATAACGCCGTAAATGGCGAAGAAACGGGCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTg                                                                                                                                            <  1:358764/251‑1 (MQ=255)                                                                                                         aTAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGcac                                                                                                                                         <  1:383505/251‑1 (MQ=255)                                                                                                                  gaaaTGGAGGAGAAACCGGCTAAATAGGTGGAGTAAAGGCATTTACGGGAGAAAAAAGCGGCACAAACAGGAAGAAATGAAATGACTGAGTCAGCCCAGAAGAATTTCCCCGCGTATTCGCACCTTCCCTAACTAATCAATGCGTTGAGTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTTATGGTATTGTTACGTTTAGGTAACAAGAAATGTGTTTGCACAAGGAtt                                                                                                                                  <  2:617837/248‑1 (MQ=255)                                                                                                                           aataaaCGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTACGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTAAGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGAtt                                                                                                                       >  2:524080/4‑251 (MQ=255)                                                                                                                                       aaaTAGGCTGATTCAAGGCATTTACGGGAGAAAAAGTCGGCACCACCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTg                                                                                                                                                                                                                                    >  2:36758/1‑130 (MQ=14)                                                                                                                                       aaaTAGGCTGATTCAAGGCATTTACGGGAGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTg                                                                                                                                                                                                                                    <  1:36758/130‑1 (MQ=255)                                                                                                                                                gATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGc                                                                                                   <  1:450279/250‑1 (MQ=255)                                                                                                                                                 aTTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAAATTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGa                                                                                                 <  1:175064/251‑1 (MQ=255)                                                                                                                                                        gCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTa                                                                                                                                                                            >  2:170309/1‑169 (MQ=255)                                                                                                                                                        gCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTa                                                                                                                                                                            <  1:170309/169‑1 (MQ=255)                                                                                                                                                         cattaaccggataaaaaaTCGGTACAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATCCGCACCGTCCCTAACTAACCAATGGGGTGATTGAACAACCAGCTAATAGGTGAGATTTTCTTAGCACACAACTGTTAAATGACATGGTGTGGTTACGTGTAGGTAACAATAAATTTGTCTGCACGAGGAGTACATCATGATTGTGGCGATGCTGAAATCAgtcacagggagg                                                                                         <  2:92469/239‑12 (MQ=12)                                                                                                                                                                 ggAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGACTGTAAATCCAGCTAAGAGGTGCGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTGGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGACATTtct                                                                                 >  2:660331/1‑251 (MQ=255)                                                                                                                                                                  gagaAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGAATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACCTCATGATTATGGCGAAACTGCAGTCAGCGAAAGGGAAGAAATTtctc                                                                                >  2:572538/1‑251 (MQ=255)                                                                                                                                                                        aaaTCTGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGt                                                                          <  2:45116/251‑1 (MQ=255)                                                                                                                                                                          aTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGttt                                                                        <  2:665774/251‑1 (MQ=255)                                                                                                                                                                           acGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTttg                                                                       <  1:664533/250‑1 (MQ=255)                                                                                                                                                                                    aCATGAAGGAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCAAGCTAAGAGGTGAGGTTTTCAAAGACGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGc                                                                                                                                           >  2:394845/1‑174 (MQ=37)                                                                                                                                                                                    aCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAAGGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGc                                                                                                                                           <  1:394845/174‑1 (MQ=255)                                                                                                                                                                                           aaaatgaaatgACTTAGTCAGCCGAGAAGAATTTCCCCGCTTAATCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTTAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGTCGAAACTGAAGTCAGCGAAAGGGAAGAAATTGCTCTTTGGTTTGTTGGCGGTTTTCatta                                                       <  2:259310/250‑1 (MQ=255)                                                                                                                                                                                            aaatgaaatgACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCattat                                                      <  1:524080/251‑1 (MQ=255)                                                                                                                                                                                             aatgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGCGAGGTTTTCAGAGCAGCCAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGtttttgtttat                                                     >  2:378579/1‑244 (MQ=255)                                                                                                                                                                                                         gAGTCAGCCGCGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGtt                                         >  1:140800/1‑251 (MQ=255)                                                                                                                                                                                                         gAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAAACAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACCGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGtt                                         <  2:218613/251‑1 (MQ=255)                                                                                                                                                                                                              aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGAc                                    >  1:242677/1‑251 (MQ=255)                                                                                                                                                                                                                       gaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGAGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGAGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTTATTATTGCGGCGTCGGTTGTGACttcgaggac                           >  2:48924/1‑243 (MQ=255)                                                                                                                                                                                                                           ttCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCAt                        <  1:347428/250‑1 (MQ=255)                                                                                                                                                                                                                                cGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGACTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATcggcgg                  <  1:660331/251‑1 (MQ=255)                                                                                                                                                                                                                                       tCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTtat            <  2:242677/250‑1 (MQ=255)                                                                                                                                                                                                                                         ccACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCGAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGa         <  2:625631/250‑1 (MQ=255)                                                                                                                                                                                                                                                cccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTTCGGGGTCTGTTTTGTCTCGCGCGACCATCAGAGGCGTtatctgcaagta   >  2:222423/1‑241 (MQ=255)                                                                                                                                                                                                                                                 ccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGAGTTGGTTGTGACTCGCGCGACCATCGGCGGCGGTTTAGAAccgtcc  >  1:326214/1‑245 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                          TGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTAC  >  NC_000913/1396998‑1397487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.