| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,088,010 | 0 | C | T | 97.2% | 105.0 / ‑6.7 | 36 | intergenic (+150/‑274) | metK/galP | methionine adenosyltransferase/galactose:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (17/18); total (18/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 3,088,011 | 0 | C | T | 100.0% | 109.7 / NA | 36 | intergenic (+151/‑273) | metK/galP | methionine adenosyltransferase/galactose:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/18); total (18/18) | |||||||||||
ACCGCAGCATACGGTCACTTTGGTCGTGAACATTTCCCGTGGGAAAAAACCGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTC > NC_000913/3087768‑3088252 || aCCGCAGCATCCGGTCCTTTTGGGCTTGAACATTCCCCGGGGGAAAAACCCGAAACAGCGCAGT‑GGCTGCGCTATGCGGCCGGTCTGAAGTATGTTTTCTTCACCTGCGTTCAAAGGCCATCCACCCGCTGGCCTTCTTCTTTTGGAGAGGTGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCAATCTTCCTGATCACGTTGCACCGCAGATTATCATCACAACTGAAATTGA‑TTaca < 2:524846/251‑1 (MQ=255) ggTCACTTTGGTCGTGAACATTTCCCGGGGGAAAAACCCGACAAAGCGATGC‑TGCTGTGCGATGCTGTCGGTCTGAATTAATCTTTCTCCACCGGCGTTCAAAGGCCAGCCACGCGCTGGCCTTTTTCTTTGGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCacaaca < 2:416758/251‑1 (MQ=255) gggcGTGAACGTTCCCCGGGGGAAAAAACCGAAAAAGC‑CTGCCTGTCGCGCGATGCTGCCGTGCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCCCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACaaatat < 2:262894/248‑4 (MQ=255) gTCGTGAACATTTCCCGTGGGAAAAAACCGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCCTCACAACTGCAATTGA‑TTACACCAACCACAACAAACAAAAAtt > 2:365430/1‑251 (MQ=255) cGTGAACATTTCCCGTGGGAAAAAACCGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTg > 1:341442/1‑251 (MQ=255) aaaCATTTCCCGTGGGAAAAAACCGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTaa < 1:751496/250‑1 (MQ=255) cccGTGGGAAAAAACCGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCCCCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTc < 1:330651/250‑1 (MQ=255) ccggggaaaaaaaCCGACATAGCGCACC‑TGTGGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCGGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCat < 2:130663/244‑1 (MQ=255) ccGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGt > 1:231788/1‑251 (MQ=255) gACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGttt > 1:516429/1‑251 (MQ=255) aCAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGtttt > 2:412893/1‑251 (MQ=255) tgctgcGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTAc > 2:713186/1‑251 (MQ=255) ctgacggtttaatgaaatattgcttcACCTGAGTACAAAAGCCAGCCACCCGCTGGCCTTTTTCTTTTGGATAGGCGTACACGACGCCTCCGGCAAAAAAAACAACCGCACAATAACATCATTCTTCATGATCACGTTTCACAGCAAATTATCATCAAAAAT‑CAACTTACTTAAACCAACCACAAAAGACAAAGAATTGTAATATTTTCATATTATTATTCGGTTTTAACAGTGGTTACAATTCTTTTCa > 2:572488/23‑250 (MQ=255) gTAATCTTTCTTCTCCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTTGATAGGCGCTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAAtt < 2:182499/251‑1 (MQ=255) tctttcttCACATGCGTACAAAGGCCAGCCTCGCGCTGGCCTGTTTTTTTTGGATGGGTGTTCACGCCTCATCCGGCAAAAAAACCGCCCGCACAATAACATCATGCTTCCTGATCACGTTTCTCCTCAGATTAACATCACAACTGAAATTGA‑TTACACCATCCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACAGTTCTTTTCAGTAAAGTCTTAATTGCa < 2:516429/250‑1 (MQ=255) aGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCCTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTatga < 2:533731/251‑1 (MQ=255) accAGCCTCGCGCTGGCGTTTTTCTTTTGGACCGGCGTCCACGCCGCATCCGACAAAAAAACCGCCCGCACCATAACATCCTTCTTCCTGATAACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTATAATATTTTCATATTATTATTCGGGTTTCACCGTTGTTACCTTCATTTTCAGTAAAGTCTTAATTGCAGCTAACAGCGTTTAATCttttatg > 2:379522/2‑245 (MQ=255) ccTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGatat > 2:278171/1‑250 (MQ=255) ccTTTTTCTTTTGGATAGGAGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAattatt < 1:311783/251‑1 (MQ=255) cTTTTGGATAGGCGTTCACGCCGCATCCGGCCAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGc > 2:324665/1‑251 (MQ=255) tGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCAATCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACcaca < 2:239045/117‑1 (MQ=255) gatCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTACTTGCAGATAACAGCGTTTAATCTATGATGATCTAACTCAATTATTTTCATGCACTTAAATCATa > 1:873708/3‑250 (MQ=255) ttCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAAc > 1:739015/1‑251 (MQ=255) gccgcATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTa > 1:566449/1‑248 (MQ=255) gcATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTGTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATaa < 1:112206/251‑1 (MQ=255) aaaaaCCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCACCCACAACAGACAAAGATTTGTTATATTTTCATAATATTATCCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTAATTGCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTa < 2:354074/251‑1 (MQ=255) aaCCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGc < 2:644005/251‑1 (MQ=255) aCCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCg < 2:231788/251‑1 (MQ=255) catcatTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGAt < 1:760601/251‑1 (MQ=255) tGATCACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATc > 1:479501/1‑251 (MQ=255) cACGTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCtttt > 2:66598/1‑251 (MQ=255) gTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACCGACAACGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTCTTTTCATGCACTTAAATCATAACTACGATCAATATTAGTGTAAGCGATTACACTGATTTGATTTGCTTCACATCTTTTTAc > 2:453283/1‑251 (MQ=255) gTTTCACCGCAGATTATCATCACAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACTCTGATGTGATTTGCTTCACATCTTTTTAc < 1:850408/251‑1 (MQ=255) tcatcaCAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATc > 1:701198/1‑251 (MQ=255) catcaCAACTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTAAGTCGTACTCCCctctct > 2:776217/1‑251 (MQ=255) aaCTGAAATTGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTc < 1:713186/251‑1 (MQ=255) || ACCGCAGCATACGGTCACTTTGGTCGTGAACATTTCCCGTGGGAAAAAACCGACAAAGCGCAGC‑TGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATAGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGA‑TTACACCAACCACAACAGACAAAGATTTGTAATATTTTCATATTATTATTCGGTTTTCACAGTTGTTACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTC > NC_000913/3087768‑3088252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |